Hb_000205_210

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig205: 277165-284262
Sequence    

Annotation

kegg
ID cit:102621544
description disease resistance protein At4g27190-like
nr
ID XP_006471944.1
description PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID A0A061GTV5
description NB-ARC domain-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_040861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21126: 277934-278727 , PASA_asmbl_21127: 279018-279761 , PASA_asmbl_21128: 280285-280797 , PASA_asmbl_21129: 281408-281664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_210 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
2 Hb_004200_040 0.0578487635 - - laccase, putative [Ricinus communis]
3 Hb_000140_260 0.0587219152 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
4 Hb_003900_050 0.0804615875 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
5 Hb_027141_010 0.0835859294 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_001105_200 0.0977047017 - - catalytic, putative [Ricinus communis]
7 Hb_000984_080 0.0987499942 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
8 Hb_004881_060 0.0992436958 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
9 Hb_000497_120 0.102281034 - - conserved hypothetical protein [Ricinus communis]
10 Hb_076895_020 0.1094120687 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
11 Hb_000081_020 0.1099417506 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
12 Hb_001104_210 0.1124536768 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
13 Hb_005064_040 0.1128450208 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
14 Hb_004463_040 0.1129793401 - - -
15 Hb_000539_080 0.116020475 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
16 Hb_020332_040 0.1245982785 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
17 Hb_031340_030 0.125202444 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
18 Hb_012807_140 0.125508788 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
19 Hb_003090_180 0.1272815752 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
20 Hb_000684_020 0.1276934632 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000205_210 Hb_000205_210 Hb_004200_040 Hb_004200_040 Hb_000205_210--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_000205_210--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_000205_210--Hb_003900_050 Hb_027141_010 Hb_027141_010 Hb_000205_210--Hb_027141_010 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_004200_040--Hb_000140_260 Hb_004200_040--Hb_003900_050 Hb_004463_040 Hb_004463_040 Hb_004200_040--Hb_004463_040 Hb_004200_040--Hb_027141_010 Hb_000684_020 Hb_000684_020 Hb_004200_040--Hb_000684_020 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000140_260--Hb_000984_080 Hb_003900_050--Hb_004463_040 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_003900_050--Hb_000684_020 Hb_027141_010--Hb_076895_020 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_027141_010--Hb_000539_080 Hb_004712_020 Hb_004712_020 Hb_001105_200--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_001105_200--Hb_012807_140 Hb_009642_010 Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_002122_040 Hb_002122_040 Hb_001105_200--Hb_002122_040 Hb_001105_200--Hb_004881_060 Hb_000984_080--Hb_076895_020 Hb_000984_080--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_000984_080--Hb_002110_270 Hb_000758_030 Hb_000758_030 Hb_000984_080--Hb_000758_030 Hb_006006_070 Hb_006006_070 Hb_000984_080--Hb_006006_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00355325 1.36137 0.103275 0.952667 0.00355492 0.00950057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0121942 6.80207 0.653274

CAGE analysis