Hb_000205_240

Information

Type -
Description -
Location Contig205: 291439-295570
Sequence    

Annotation

kegg
ID rcu:RCOM_0609820
description ubiquitin-protein ligase, putative
nr
ID XP_002521998.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID B9S7M9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0609820 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box fbd lrr-repeat protein at1g13570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21131: 291259-294694 , PASA_asmbl_21132: 291303-294430
cDNA
(Sanger)
(ID:Location)		 013_K12.ab1: 292684-294602

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_240 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000363_120 0.0717099572 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
3 Hb_000802_090 0.0750310574 - - ornithine aminotransferase, putative [Ricinus communis]
4 Hb_084490_010 0.0775334172 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
5 Hb_000649_250 0.0816281335 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
6 Hb_006738_050 0.0827552419 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
7 Hb_003398_080 0.085363281 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
8 Hb_002119_090 0.0876351038 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
9 Hb_005389_160 0.0886942693 - - PREDICTED: casein kinase I [Jatropha curcas]
10 Hb_004899_040 0.0894223489 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
11 Hb_001257_100 0.0915758889 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
12 Hb_007017_040 0.0917409672 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
13 Hb_000700_060 0.0931063593 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
14 Hb_026198_060 0.0962784076 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
15 Hb_001545_150 0.097099984 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
16 Hb_004785_030 0.0974129076 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_000094_090 0.0982273782 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
18 Hb_000069_130 0.0998814572 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
19 Hb_000809_170 0.1005195187 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
20 Hb_020805_150 0.1021034556 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000205_240 Hb_000205_240 Hb_000363_120 Hb_000363_120 Hb_000205_240--Hb_000363_120 Hb_000802_090 Hb_000802_090 Hb_000205_240--Hb_000802_090 Hb_084490_010 Hb_084490_010 Hb_000205_240--Hb_084490_010 Hb_000649_250 Hb_000649_250 Hb_000205_240--Hb_000649_250 Hb_006738_050 Hb_006738_050 Hb_000205_240--Hb_006738_050 Hb_003398_080 Hb_003398_080 Hb_000205_240--Hb_003398_080 Hb_000094_090 Hb_000094_090 Hb_000363_120--Hb_000094_090 Hb_000809_160 Hb_000809_160 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_011360_050 Hb_011360_050 Hb_000802_090--Hb_011360_050 Hb_002232_480 Hb_002232_480 Hb_000802_090--Hb_002232_480 Hb_001329_200 Hb_001329_200 Hb_000802_090--Hb_001329_200 Hb_000802_090--Hb_003398_080 Hb_007839_020 Hb_007839_020 Hb_000802_090--Hb_007839_020 Hb_007017_040 Hb_007017_040 Hb_084490_010--Hb_007017_040 Hb_012239_020 Hb_012239_020 Hb_084490_010--Hb_012239_020 Hb_003925_040 Hb_003925_040 Hb_084490_010--Hb_003925_040 Hb_003688_180 Hb_003688_180 Hb_084490_010--Hb_003688_180 Hb_000815_240 Hb_000815_240 Hb_084490_010--Hb_000815_240 Hb_003918_030 Hb_003918_030 Hb_000649_250--Hb_003918_030 Hb_026198_060 Hb_026198_060 Hb_000649_250--Hb_026198_060 Hb_000649_250--Hb_004899_040 Hb_022425_060 Hb_022425_060 Hb_000649_250--Hb_022425_060 Hb_004517_020 Hb_004517_020 Hb_000649_250--Hb_004517_020 Hb_001257_100 Hb_001257_100 Hb_000649_250--Hb_001257_100 Hb_000700_060 Hb_000700_060 Hb_006738_050--Hb_000700_060 Hb_002119_090 Hb_002119_090 Hb_006738_050--Hb_002119_090 Hb_004410_070 Hb_004410_070 Hb_006738_050--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_006738_050--Hb_004899_040 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0068 56.8132 25.5996 31.542 16.5715 15.065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8721 16.1195 19.066 21.405 13.3278

CAGE analysis