Hb_000205_270

Information

Type -
Description -
Location Contig205: 323942-326650
Sequence    

Annotation

kegg
ID rcu:RCOM_1609390
description hypothetical protein
nr
ID XP_012070552.1
description PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05078 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21139: 323921-326523 , PASA_asmbl_21140: 324075-326442
cDNA
(Sanger)
(ID:Location)		 012_C20.ab1: 324116-326523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_270 0.0 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
2 Hb_016065_010 0.0479562446 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
3 Hb_000009_160 0.0625170246 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
4 Hb_001109_020 0.0627533775 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005488_010 0.064688469 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000329_310 0.0650837856 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_000444_050 0.0658177478 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
8 Hb_009666_040 0.0672362601 - - glutathione transferase, putative [Ricinus communis]
9 Hb_055062_030 0.0679603075 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
10 Hb_001718_100 0.0690666963 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_021650_030 0.0703280509 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
12 Hb_001829_060 0.0719003683 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
13 Hb_000883_050 0.0720745984 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
14 Hb_001691_210 0.0720988223 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
15 Hb_000671_150 0.0734022431 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_001671_020 0.073420695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
17 Hb_009486_130 0.0735691997 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
18 Hb_000239_010 0.0743391982 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_004837_140 0.0760155248 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
20 Hb_003927_130 0.0763976574 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_000205_270 Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_055062_030 Hb_055062_030 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_016065_010--Hb_000009_160 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_005431_010 Hb_005431_010 Hb_000009_160--Hb_005431_010 Hb_000009_160--Hb_055062_030 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_055062_030 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_000329_310--Hb_001829_060 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000444_050--Hb_000329_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.3652 11.1354 9.90417 14.2733 29.2497 44.2363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7676 55.5945 54.2942 18.6907 9.99955

CAGE analysis