Hb_000205_340

Information

Type -
Description -
Location Contig205: 393813-394926
Sequence    

Annotation

kegg
ID rcu:RCOM_0610210
description hypothetical protein
nr
ID XP_012089483.1
description PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
swissprot
ID Q9XIP5
description Putative B3 domain-containing protein At2g27410 OS=Arabidopsis thaliana GN=At2g27410 PE=3 SV=2
trembl
ID B9S7N8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_340 0.0 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
2 Hb_001987_010 0.0936502997 - - -
3 Hb_003551_030 0.09868254 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
4 Hb_002571_090 0.1050662145 - - -
5 Hb_000296_060 0.1397422977 - - -
6 Hb_012424_010 0.1611762933 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_001693_040 0.1734745864 - - -
8 Hb_000276_050 0.1905287325 - - -
9 Hb_187513_010 0.1951163553 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
10 Hb_069783_020 0.1968192359 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
11 Hb_000940_190 0.2106576386 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_099723_010 0.2106960589 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
13 Hb_065943_010 0.2121447763 - - -
14 Hb_006157_050 0.2140556092 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_032531_010 0.22619264 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000065_050 0.2286337207 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_010736_030 0.2352110901 - - -
18 Hb_000574_550 0.2434550074 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
19 Hb_143874_010 0.2591996643 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
20 Hb_067769_010 0.2776545639 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_000205_340 Hb_000205_340 Hb_001987_010 Hb_001987_010 Hb_000205_340--Hb_001987_010 Hb_003551_030 Hb_003551_030 Hb_000205_340--Hb_003551_030 Hb_002571_090 Hb_002571_090 Hb_000205_340--Hb_002571_090 Hb_000296_060 Hb_000296_060 Hb_000205_340--Hb_000296_060 Hb_012424_010 Hb_012424_010 Hb_000205_340--Hb_012424_010 Hb_001693_040 Hb_001693_040 Hb_000205_340--Hb_001693_040 Hb_001987_010--Hb_003551_030 Hb_001987_010--Hb_001693_040 Hb_001987_010--Hb_012424_010 Hb_001987_010--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_001987_010--Hb_069783_020 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_012424_010 Hb_003551_030--Hb_000296_060 Hb_002571_090--Hb_000296_060 Hb_000065_050 Hb_000065_050 Hb_002571_090--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_002571_090--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_002571_090--Hb_187513_010 Hb_002571_090--Hb_003551_030 Hb_000296_060--Hb_187513_010 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_012424_010 Hb_012424_010--Hb_069783_020 Hb_012424_010--Hb_187513_010 Hb_001693_040--Hb_069783_020 Hb_001693_040--Hb_012424_010 Hb_001693_040--Hb_000296_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.21065 0.0305819 0.0780584

CAGE analysis