Hb_000206_120

Information

Type -
Description -
Location Contig206: 191692-194016
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04960g
description POPTRDRAFT_734933; C2 domain-containing family protein
nr
ID XP_012087737.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067JKU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25512 PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21225: 191443-195103 , PASA_asmbl_21226: 191443-194869
cDNA
(Sanger)
(ID:Location)		 047_P19.ab1: 193577-195103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_120 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
2 Hb_102269_010 0.0993170551 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
3 Hb_010925_020 0.1049083231 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
4 Hb_007044_230 0.1114528958 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
5 Hb_000935_090 0.1118058838 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
6 Hb_132840_100 0.1125181301 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
7 Hb_004223_290 0.1125868141 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
8 Hb_000011_210 0.1159379754 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
9 Hb_001031_040 0.1166707793 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002044_050 0.1182526475 - - -
11 Hb_003029_130 0.1206539244 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
12 Hb_000270_160 0.1210046821 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
13 Hb_002044_170 0.1239582629 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
14 Hb_000025_650 0.1241830521 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
15 Hb_004701_050 0.1261574305 - - alpha1 family protein [Populus trichocarpa]
16 Hb_003656_180 0.12800576 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
17 Hb_001473_090 0.1287253651 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
18 Hb_000035_410 0.1291112436 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_001301_090 0.129226302 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000029_320 0.1306520649 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_120 Hb_000206_120 Hb_102269_010 Hb_102269_010 Hb_000206_120--Hb_102269_010 Hb_010925_020 Hb_010925_020 Hb_000206_120--Hb_010925_020 Hb_007044_230 Hb_007044_230 Hb_000206_120--Hb_007044_230 Hb_000935_090 Hb_000935_090 Hb_000206_120--Hb_000935_090 Hb_132840_100 Hb_132840_100 Hb_000206_120--Hb_132840_100 Hb_004223_290 Hb_004223_290 Hb_000206_120--Hb_004223_290 Hb_003656_180 Hb_003656_180 Hb_102269_010--Hb_003656_180 Hb_001473_090 Hb_001473_090 Hb_102269_010--Hb_001473_090 Hb_001811_120 Hb_001811_120 Hb_102269_010--Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_102269_010--Hb_000475_020 Hb_003029_130 Hb_003029_130 Hb_102269_010--Hb_003029_130 Hb_000160_290 Hb_000160_290 Hb_102269_010--Hb_000160_290 Hb_010925_020--Hb_003029_130 Hb_010925_020--Hb_001473_090 Hb_010925_020--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_010925_020--Hb_001178_150 Hb_001369_350 Hb_001369_350 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_007044_230--Hb_102269_010 Hb_010128_120 Hb_010128_120 Hb_007044_230--Hb_010128_120 Hb_058702_010 Hb_058702_010 Hb_007044_230--Hb_058702_010 Hb_000504_150 Hb_000504_150 Hb_007044_230--Hb_000504_150 Hb_000029_320 Hb_000029_320 Hb_007044_230--Hb_000029_320 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_001638_300 Hb_001638_300 Hb_132840_100--Hb_001638_300 Hb_032920_130 Hb_032920_130 Hb_132840_100--Hb_032920_130 Hb_000035_410 Hb_000035_410 Hb_132840_100--Hb_000035_410 Hb_002044_170 Hb_002044_170 Hb_132840_100--Hb_002044_170 Hb_000176_130 Hb_000176_130 Hb_132840_100--Hb_000176_130 Hb_000365_330 Hb_000365_330 Hb_132840_100--Hb_000365_330 Hb_004875_030 Hb_004875_030 Hb_004223_290--Hb_004875_030 Hb_000345_360 Hb_000345_360 Hb_004223_290--Hb_000345_360 Hb_004223_290--Hb_000035_410 Hb_002044_050 Hb_002044_050 Hb_004223_290--Hb_002044_050 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040 Hb_041828_010 Hb_041828_010 Hb_004223_290--Hb_041828_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.4959 74.1782 27.7478 65.9362 100.506 112.896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3571 10.126 19.4455 27.2425 68.7396

CAGE analysis