Hb_000206_150

Information

Type -
Description -
Location Contig206: 232024-233605
Sequence    

Annotation

kegg
ID tcc:TCM_003811
description Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein, putative
nr
ID CDP03818.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068U883
description Coffea canephora DH200=94 genomic scaffold, scaffold_11 OS=Coffea canephora GN=GSCOC_T00016304001 PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_150 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000106_040 0.0705034011 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
3 Hb_005399_010 0.1018293783 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_000086_590 0.1047700401 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
5 Hb_000367_290 0.1081309899 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
6 Hb_000390_070 0.1100622251 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
7 Hb_000497_140 0.1113969797 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_029866_130 0.1122697076 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
9 Hb_000016_110 0.1134762993 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
10 Hb_000152_890 0.1141016205 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
11 Hb_123777_030 0.1148419546 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
12 Hb_009421_030 0.1160728535 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
13 Hb_000152_560 0.116145397 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
14 Hb_000977_180 0.1179756814 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
15 Hb_005295_040 0.118568222 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
16 Hb_000413_130 0.1207600229 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
17 Hb_000906_060 0.1229030577 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
18 Hb_000270_140 0.1236873381 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
19 Hb_012016_020 0.1244794728 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
20 Hb_000832_130 0.124845952 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_150 Hb_000206_150 Hb_000106_040 Hb_000106_040 Hb_000206_150--Hb_000106_040 Hb_005399_010 Hb_005399_010 Hb_000206_150--Hb_005399_010 Hb_000086_590 Hb_000086_590 Hb_000206_150--Hb_000086_590 Hb_000367_290 Hb_000367_290 Hb_000206_150--Hb_000367_290 Hb_000390_070 Hb_000390_070 Hb_000206_150--Hb_000390_070 Hb_000497_140 Hb_000497_140 Hb_000206_150--Hb_000497_140 Hb_000106_040--Hb_000497_140 Hb_000106_040--Hb_005399_010 Hb_000016_110 Hb_000016_110 Hb_000106_040--Hb_000016_110 Hb_000106_040--Hb_000367_290 Hb_029866_130 Hb_029866_130 Hb_000106_040--Hb_029866_130 Hb_005399_010--Hb_000016_110 Hb_012016_020 Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_005399_010--Hb_000497_140 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_010710_010 Hb_010710_010 Hb_000086_590--Hb_010710_010 Hb_006091_030 Hb_006091_030 Hb_000086_590--Hb_006091_030 Hb_000413_180 Hb_000413_180 Hb_000086_590--Hb_000413_180 Hb_123777_030 Hb_123777_030 Hb_000086_590--Hb_123777_030 Hb_000723_260 Hb_000723_260 Hb_000086_590--Hb_000723_260 Hb_000086_590--Hb_000497_140 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_000497_140--Hb_000016_110 Hb_000497_140--Hb_006091_030 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7127 9.26093 0.823985 2.37736 20.643 16.4876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.7974 4.15052 11.1207 5.36461 4.10247

CAGE analysis