Hb_000206_170

Information

Type -
Description -
Location Contig206: 257763-259599
Sequence    

Annotation

kegg
ID rcu:RCOM_0413420
description hypothetical protein
nr
ID KDP24598.1
description hypothetical protein JCGZ_25514 [Jatropha curcas]
swissprot
ID O48529
description Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1
trembl
ID A0A067JP34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25514 PE=4 SV=1
Gene Ontology
ID GO:0009534
description rhodanese-like domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21232: 257770-261174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_170 0.0 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
2 Hb_002411_100 0.1245033978 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
3 Hb_011519_050 0.1284521797 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
4 Hb_001405_090 0.1296054466 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
5 Hb_004459_060 0.1307524339 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
6 Hb_006620_070 0.1310260441 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
7 Hb_002272_220 0.1325554158 - - conserved hypothetical protein [Ricinus communis]
8 Hb_058620_080 0.1391789742 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
9 Hb_000442_070 0.1425618348 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
10 Hb_003948_020 0.1443038856 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
11 Hb_089966_010 0.1458857092 - - -
12 Hb_012545_040 0.1489859776 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004236_040 0.151882688 - - biotin carboxyl carrier protein [Vernicia fordii]
14 Hb_011114_020 0.1534808225 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
15 Hb_001623_380 0.1546098437 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
16 Hb_010557_010 0.1564926437 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
17 Hb_047418_010 0.1604598598 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
18 Hb_015175_040 0.16096919 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006420_010 0.1610386641 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
20 Hb_005779_020 0.1660677737 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000206_170 Hb_000206_170 Hb_002411_100 Hb_002411_100 Hb_000206_170--Hb_002411_100 Hb_011519_050 Hb_011519_050 Hb_000206_170--Hb_011519_050 Hb_001405_090 Hb_001405_090 Hb_000206_170--Hb_001405_090 Hb_004459_060 Hb_004459_060 Hb_000206_170--Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_000206_170--Hb_006620_070 Hb_002272_220 Hb_002272_220 Hb_000206_170--Hb_002272_220 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000544_080 Hb_000544_080 Hb_011519_050--Hb_000544_080 Hb_058620_080 Hb_058620_080 Hb_011519_050--Hb_058620_080 Hb_000061_250 Hb_000061_250 Hb_011519_050--Hb_000061_250 Hb_011519_050--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_011519_050--Hb_000045_050 Hb_011519_050--Hb_000703_070 Hb_001405_090--Hb_006620_070 Hb_001405_090--Hb_004459_060 Hb_000442_070 Hb_000442_070 Hb_001405_090--Hb_000442_070 Hb_007694_060 Hb_007694_060 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_004459_060--Hb_006620_070 Hb_004459_060--Hb_007694_060 Hb_000146_030 Hb_000146_030 Hb_004459_060--Hb_000146_030 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_000005_130 Hb_000005_130 Hb_004459_060--Hb_000005_130 Hb_006620_070--Hb_007694_060 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_006620_070--Hb_000442_070 Hb_002272_220--Hb_002411_100 Hb_000390_210 Hb_000390_210 Hb_002272_220--Hb_000390_210 Hb_002272_220--Hb_010557_010 Hb_001623_380 Hb_001623_380 Hb_002272_220--Hb_001623_380 Hb_009393_130 Hb_009393_130 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401413 0.849481 18.715 7.80922 1.3726 0.0733228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62431 3.54994 0.817259 0.969947 21.0684

CAGE analysis