Hb_000206_190

Information

Type -
Description -
Location Contig206: 267863-269494
Sequence    

Annotation

kegg
ID pxb:103959599
description F-box/LRR-repeat protein At4g14103-like
nr
ID XP_009370226.1
description PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
swissprot
ID Q9ZR09
description Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=3 SV=1
trembl
ID M5VVF8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016979mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21235: 267474-267929 , PASA_asmbl_21236: 267816-267970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_190 0.0 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
2 Hb_071869_010 0.1444974011 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
3 Hb_001050_030 0.1810633354 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_102632_010 0.1855946572 - - PREDICTED: CST complex subunit STN1 [Jatropha curcas]
5 Hb_135442_010 0.1883766571 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
6 Hb_002154_070 0.1923111 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
7 Hb_002863_120 0.1997114689 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
8 Hb_000100_130 0.2097125099 - - hypothetical protein VITISV_026702 [Vitis vinifera]
9 Hb_002035_080 0.2149400837 - - unnamed protein product [Vitis vinifera]
10 Hb_000571_010 0.2162836408 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
11 Hb_029921_020 0.2236421782 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
12 Hb_004097_120 0.2240857123 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_001221_140 0.2277334599 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000077_220 0.2304683501 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
15 Hb_000853_400 0.2345509057 - - PREDICTED: CTP synthase [Jatropha curcas]
16 Hb_012738_030 0.23630015 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001882_130 0.236651711 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
18 Hb_001718_050 0.2405522002 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
19 Hb_000424_150 0.2408991367 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
20 Hb_000574_360 0.2411048188 - - PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000206_190 Hb_000206_190 Hb_071869_010 Hb_071869_010 Hb_000206_190--Hb_071869_010 Hb_001050_030 Hb_001050_030 Hb_000206_190--Hb_001050_030 Hb_102632_010 Hb_102632_010 Hb_000206_190--Hb_102632_010 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_002154_070 Hb_002154_070 Hb_000206_190--Hb_002154_070 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_071869_010--Hb_002154_070 Hb_000928_050 Hb_000928_050 Hb_071869_010--Hb_000928_050 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_000077_220 Hb_000077_220 Hb_001050_030--Hb_000077_220 Hb_001050_030--Hb_002154_070 Hb_002814_060 Hb_002814_060 Hb_001050_030--Hb_002814_060 Hb_000424_150 Hb_000424_150 Hb_001050_030--Hb_000424_150 Hb_003376_260 Hb_003376_260 Hb_001050_030--Hb_003376_260 Hb_000571_010 Hb_000571_010 Hb_102632_010--Hb_000571_010 Hb_002307_080 Hb_002307_080 Hb_102632_010--Hb_002307_080 Hb_102632_010--Hb_000077_220 Hb_010712_070 Hb_010712_070 Hb_102632_010--Hb_010712_070 Hb_002471_180 Hb_002471_180 Hb_102632_010--Hb_002471_180 Hb_002035_080 Hb_002035_080 Hb_135442_010--Hb_002035_080 Hb_003157_030 Hb_003157_030 Hb_135442_010--Hb_003157_030 Hb_000193_140 Hb_000193_140 Hb_135442_010--Hb_000193_140 Hb_141547_010 Hb_141547_010 Hb_135442_010--Hb_141547_010 Hb_007603_010 Hb_007603_010 Hb_135442_010--Hb_007603_010 Hb_001718_050 Hb_001718_050 Hb_002154_070--Hb_001718_050 Hb_004244_010 Hb_004244_010 Hb_002154_070--Hb_004244_010 Hb_028912_040 Hb_028912_040 Hb_002154_070--Hb_028912_040 Hb_001711_050 Hb_001711_050 Hb_002863_120--Hb_001711_050 Hb_000853_400 Hb_000853_400 Hb_002863_120--Hb_000853_400 Hb_008778_010 Hb_008778_010 Hb_002863_120--Hb_008778_010 Hb_002863_120--Hb_002035_080 Hb_001882_130 Hb_001882_130 Hb_002863_120--Hb_001882_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06114 1.56546 1.32712 1.15504 0.540116 3.93497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.5281 1.1991 1.32919

CAGE analysis