Hb_000206_210

Information

Type -
Description -
Location Contig206: 284890-287552
Sequence    

Annotation

kegg
ID rcu:RCOM_0413680
description nucleic acid binding protein, putative
nr
ID XP_012087742.1
description PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
swissprot
ID Q6DGZ0
description G patch domain-containing protein 11 OS=Danio rerio GN=gpatch11 PE=2 SV=1
trembl
ID A0A067JL26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25518 PE=4 SV=1
Gene Ontology
ID GO:0003676
description g patch domain-containing protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21237: 285854-287514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_210 0.0 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
2 Hb_004254_120 0.0583111938 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024185_020 0.0661040802 - - -
4 Hb_000777_040 0.0667269842 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
5 Hb_009838_080 0.0670783162 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
6 Hb_000928_210 0.0686770584 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
7 Hb_000173_290 0.0720020826 - - guanylate kinase, putative [Ricinus communis]
8 Hb_032202_190 0.0765885402 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
9 Hb_003032_040 0.0782706602 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
10 Hb_011316_040 0.0784680191 - - peptidase, putative [Ricinus communis]
11 Hb_002739_100 0.0784987306 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_000985_030 0.0804909142 - - PREDICTED: RRP15-like protein [Populus euphratica]
13 Hb_005618_170 0.0823505638 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
14 Hb_025240_040 0.0827320827 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
15 Hb_000107_620 0.0831368053 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
16 Hb_004724_080 0.08580477 - - conserved hypothetical protein [Ricinus communis]
17 Hb_127552_030 0.0861875144 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
18 Hb_000085_050 0.0864008238 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000876_070 0.0864335044 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
20 Hb_001277_330 0.0871694123 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_210 Hb_000206_210 Hb_004254_120 Hb_004254_120 Hb_000206_210--Hb_004254_120 Hb_024185_020 Hb_024185_020 Hb_000206_210--Hb_024185_020 Hb_000777_040 Hb_000777_040 Hb_000206_210--Hb_000777_040 Hb_009838_080 Hb_009838_080 Hb_000206_210--Hb_009838_080 Hb_000928_210 Hb_000928_210 Hb_000206_210--Hb_000928_210 Hb_000173_290 Hb_000173_290 Hb_000206_210--Hb_000173_290 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_004254_120--Hb_000928_210 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110 Hb_001009_270 Hb_001009_270 Hb_000777_040--Hb_001009_270 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_000985_030 Hb_000985_030 Hb_000777_040--Hb_000985_030 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_000928_210--Hb_000876_070 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000173_290--Hb_000777_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0349 5.68998 6.48757 9.0501 15.8661 13.888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2632 20.8143 20.8439 11.3347 13.4472

CAGE analysis