Hb_000206_220

Information

Type transcription factor
Description TF Family: SBP
Location Contig206: 290121-296859
Sequence    

Annotation

kegg
ID rcu:RCOM_0413690
description LIGULELESS1 protein, putative
nr
ID XP_012087743.1
description PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
swissprot
ID Q700W2
description Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2
trembl
ID B9T274
description LIGULELESS1 protein, putative OS=Ricinus communis GN=RCOM_0413690 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21238: 290020-290366 , PASA_asmbl_21239: 290573-290697 , PASA_asmbl_21240: 290870-296710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_220 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
2 Hb_003540_230 0.1079404146 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
3 Hb_048141_010 0.1136860517 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
4 Hb_010578_090 0.1227022713 - - HEV2.1 [Hevea brasiliensis]
5 Hb_055259_010 0.1280797857 - - -
6 Hb_005016_130 0.1283509637 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_060668_010 0.1291761131 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
8 Hb_008847_010 0.1326982078 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_002235_230 0.1368108967 - - latex abundant protein 1 [Hevea brasiliensis]
10 Hb_001999_120 0.1378442621 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
11 Hb_006831_010 0.1385170883 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_024505_040 0.1390372167 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
13 Hb_001514_180 0.1395191598 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
14 Hb_000130_390 0.148833505 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
15 Hb_003038_180 0.1498399533 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
16 Hb_004787_090 0.1525967878 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
17 Hb_002000_110 0.1543692518 - - ASR-like protein 2 [Hevea brasiliensis]
18 Hb_001741_080 0.1556922133 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
19 Hb_029879_080 0.1566770513 - - unknown [Populus trichocarpa]
20 Hb_003106_140 0.157050866 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000206_220 Hb_000206_220 Hb_003540_230 Hb_003540_230 Hb_000206_220--Hb_003540_230 Hb_048141_010 Hb_048141_010 Hb_000206_220--Hb_048141_010 Hb_010578_090 Hb_010578_090 Hb_000206_220--Hb_010578_090 Hb_055259_010 Hb_055259_010 Hb_000206_220--Hb_055259_010 Hb_005016_130 Hb_005016_130 Hb_000206_220--Hb_005016_130 Hb_060668_010 Hb_060668_010 Hb_000206_220--Hb_060668_010 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_008847_010 Hb_008847_010 Hb_048141_010--Hb_008847_010 Hb_048141_010--Hb_003540_230 Hb_048141_010--Hb_010578_090 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080 Hb_029879_080 Hb_029879_080 Hb_010578_090--Hb_029879_080 Hb_010578_090--Hb_005016_130 Hb_002298_040 Hb_002298_040 Hb_010578_090--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_010578_090--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_010578_090--Hb_000284_010 Hb_002805_290 Hb_002805_290 Hb_055259_010--Hb_002805_290 Hb_003106_140 Hb_003106_140 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_005618_040 Hb_005618_040 Hb_055259_010--Hb_005618_040 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_000078_030 Hb_000078_030 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_000284_010 Hb_060668_010--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_060668_010--Hb_004206_030 Hb_000041_070 Hb_000041_070 Hb_060668_010--Hb_000041_070 Hb_060668_010--Hb_005016_130 Hb_001514_180 Hb_001514_180 Hb_060668_010--Hb_001514_180 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.0335 2.63727 0.754964 3.25332 37.0665 48.4482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.25 39.1014 57.4097 15.2799 0.606332

CAGE analysis