Hb_000206_230

Information

Type -
Description -
Location Contig206: 302192-303468
Sequence    

Annotation

kegg
ID rcu:RCOM_0413800
description hypothetical protein
nr
ID XP_002532344.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T275
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0413800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001329_070 0.0922164219 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
3 Hb_002016_140 0.1224359417 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
4 Hb_011242_050 0.1226233172 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
5 Hb_002007_320 0.1273103832 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
6 Hb_000310_120 0.1340999783 - - PREDICTED: probable transaldolase [Jatropha curcas]
7 Hb_013405_070 0.1344339477 - - ferric-chelate reductase, putative [Ricinus communis]
8 Hb_003371_070 0.1348211316 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
9 Hb_001863_070 0.1356003317 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
10 Hb_000331_350 0.1361584707 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
11 Hb_002027_440 0.1363482919 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029977_020 0.1423167876 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
13 Hb_003602_060 0.1434399283 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
14 Hb_188281_030 0.1467962843 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
15 Hb_000375_300 0.1508514024 - - PREDICTED: cyanate hydratase [Jatropha curcas]
16 Hb_004052_100 0.1529211258 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
17 Hb_010172_110 0.1544546214 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_007101_260 0.1555140147 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_001817_100 0.1580563938 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
20 Hb_002486_020 0.1599324613 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000206_230 Hb_000206_230 Hb_001329_070 Hb_001329_070 Hb_000206_230--Hb_001329_070 Hb_002016_140 Hb_002016_140 Hb_000206_230--Hb_002016_140 Hb_011242_050 Hb_011242_050 Hb_000206_230--Hb_011242_050 Hb_002007_320 Hb_002007_320 Hb_000206_230--Hb_002007_320 Hb_000310_120 Hb_000310_120 Hb_000206_230--Hb_000310_120 Hb_013405_070 Hb_013405_070 Hb_000206_230--Hb_013405_070 Hb_001329_070--Hb_002016_140 Hb_002027_440 Hb_002027_440 Hb_001329_070--Hb_002027_440 Hb_001329_070--Hb_011242_050 Hb_001329_070--Hb_013405_070 Hb_003602_060 Hb_003602_060 Hb_001329_070--Hb_003602_060 Hb_002391_320 Hb_002391_320 Hb_002016_140--Hb_002391_320 Hb_000589_170 Hb_000589_170 Hb_002016_140--Hb_000589_170 Hb_012851_020 Hb_012851_020 Hb_002016_140--Hb_012851_020 Hb_000753_110 Hb_000753_110 Hb_002016_140--Hb_000753_110 Hb_011242_050--Hb_002027_440 Hb_001863_070 Hb_001863_070 Hb_011242_050--Hb_001863_070 Hb_188281_030 Hb_188281_030 Hb_011242_050--Hb_188281_030 Hb_000345_460 Hb_000345_460 Hb_011242_050--Hb_000345_460 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_000406_030 Hb_000406_030 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_000310_120--Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.695661 1.5278 6.44947 7.2647 0.113564 0.164621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14347 3.01468 1.05262 3.01819 3.9292

CAGE analysis