Hb_000206_240

Information

Type -
Description -
Location Contig206: 309260-312010
Sequence    

Annotation

kegg
ID rcu:RCOM_0278060
description hypothetical protein
nr
ID XP_002530358.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0278060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21245: 309962-310105 , PASA_asmbl_21247: 311070-311749 , PASA_asmbl_21249: 312468-312735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004052_090 0.0655197137 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
3 Hb_004846_070 0.0695086367 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_000107_420 0.0722307538 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
5 Hb_000213_100 0.0762608663 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
6 Hb_000258_270 0.0817331739 - - PREDICTED: cullin-3A [Jatropha curcas]
7 Hb_007483_100 0.0858407238 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
8 Hb_004374_070 0.0864123129 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
9 Hb_003371_090 0.0869626989 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
10 Hb_001959_190 0.0871686177 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
11 Hb_004607_030 0.0913617048 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
12 Hb_007441_220 0.0919355164 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
13 Hb_002218_010 0.0963425124 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
14 Hb_000723_080 0.0965154408 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
15 Hb_002276_130 0.096840521 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
16 Hb_000041_100 0.0968711983 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
17 Hb_007532_030 0.0985435529 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
18 Hb_000270_670 0.0991199589 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
19 Hb_016901_010 0.1006238961 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
20 Hb_000204_210 0.1021058247 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_240 Hb_000206_240 Hb_004052_090 Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100 Hb_004052_090--Hb_000258_270 Hb_004052_090--Hb_007483_100 Hb_000836_040 Hb_000836_040 Hb_004052_090--Hb_000836_040 Hb_003371_090 Hb_003371_090 Hb_004052_090--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_004052_090--Hb_002218_010 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_001085_060 Hb_001085_060 Hb_000107_420--Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_000107_420--Hb_007441_220 Hb_004374_070 Hb_004374_070 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000204_210 Hb_000204_210 Hb_000107_420--Hb_000204_210 Hb_022250_090 Hb_022250_090 Hb_000213_100--Hb_022250_090 Hb_000213_100--Hb_003371_090 Hb_000213_100--Hb_002218_010 Hb_007532_030 Hb_007532_030 Hb_000213_100--Hb_007532_030 Hb_007508_090 Hb_007508_090 Hb_000213_100--Hb_007508_090 Hb_000258_270--Hb_000836_040 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_002678_020 Hb_002678_020 Hb_007483_100--Hb_002678_020 Hb_007483_100--Hb_004374_070 Hb_009178_030 Hb_009178_030 Hb_007483_100--Hb_009178_030 Hb_007483_100--Hb_000258_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57962 5.46971 0.915979 3.10517 3.09331 4.7691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77587 5.30314 9.9612 3.33835 3.84533

CAGE analysis