Hb_000207_050

Information

Type -
Description -
Location Contig207: 83715-91849
Sequence    

Annotation

kegg
ID rcu:RCOM_0261650
description DNA-directed RNA polymerase II, putative
nr
ID XP_012072607.1
description PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L031
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06357 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_050 0.0 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
2 Hb_000072_320 0.0549884286 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
3 Hb_002044_150 0.0649908283 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_002169_050 0.0753075812 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
5 Hb_005269_070 0.0753102666 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
6 Hb_001489_080 0.0767981646 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_029510_050 0.0769010356 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_000381_120 0.0781493297 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
9 Hb_002169_040 0.0782982393 - - unknown [Populus trichocarpa]
10 Hb_007479_040 0.0783347368 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001004_070 0.0788330575 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000028_180 0.079929366 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
13 Hb_026198_070 0.0812146539 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
14 Hb_001205_120 0.0837739155 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
15 Hb_002026_150 0.0837783019 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
16 Hb_001016_120 0.0838302928 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_001828_150 0.0841978246 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
18 Hb_001629_030 0.0849714986 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
19 Hb_156279_020 0.0850714179 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_004254_090 0.0852708672 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_050 Hb_000207_050 Hb_000072_320 Hb_000072_320 Hb_000207_050--Hb_000072_320 Hb_002044_150 Hb_002044_150 Hb_000207_050--Hb_002044_150 Hb_002169_050 Hb_002169_050 Hb_000207_050--Hb_002169_050 Hb_005269_070 Hb_005269_070 Hb_000207_050--Hb_005269_070 Hb_001489_080 Hb_001489_080 Hb_000207_050--Hb_001489_080 Hb_029510_050 Hb_029510_050 Hb_000207_050--Hb_029510_050 Hb_000095_080 Hb_000095_080 Hb_000072_320--Hb_000095_080 Hb_001016_120 Hb_001016_120 Hb_000072_320--Hb_001016_120 Hb_002169_040 Hb_002169_040 Hb_000072_320--Hb_002169_040 Hb_000072_320--Hb_029510_050 Hb_001314_050 Hb_001314_050 Hb_000072_320--Hb_001314_050 Hb_007479_040 Hb_007479_040 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_002909_140 Hb_002909_140 Hb_002169_050--Hb_002909_140 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_012498_010 Hb_012498_010 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_010142_020 Hb_010142_020 Hb_002169_050--Hb_010142_020 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_001489_080--Hb_002169_040 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64258 3.44716 6.20731 6.69421 5.96861 5.88795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37141 6.57675 10.5168 8.96859 6.90354

CAGE analysis