Hb_000207_130

Information

Type -
Description -
Location Contig207: 171485-176427
Sequence    

Annotation

kegg
ID rcu:RCOM_0685930
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012065771.1
description PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
swissprot
ID Q39016
description Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2
trembl
ID A0A067L4M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25462 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21310: 171904-173594 , PASA_asmbl_21311: 175107-176377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_130 0.0 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
2 Hb_004055_150 0.0728984562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006620_020 0.0762264366 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_000853_230 0.0763913502 - - syntaxin, putative [Ricinus communis]
5 Hb_032208_040 0.0777118584 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
6 Hb_106552_050 0.0781904785 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
7 Hb_002078_020 0.0805903174 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_008803_090 0.0818819358 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
9 Hb_003058_110 0.0825942413 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
10 Hb_007632_110 0.0827155196 - - chromatin regulatory protein sir2, putative [Ricinus communis]
11 Hb_001926_030 0.0829181853 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_001104_180 0.0856980427 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
13 Hb_002675_260 0.0876432825 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
14 Hb_020367_050 0.0877645872 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
15 Hb_009646_030 0.0878935349 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006355_010 0.0891567667 - - PREDICTED: protein NLRC3 [Jatropha curcas]
17 Hb_006960_050 0.089319234 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
18 Hb_001946_040 0.0896231169 - - conserved hypothetical protein [Ricinus communis]
19 Hb_054865_100 0.0911674264 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
20 Hb_000214_040 0.0923546608 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000207_130 Hb_000207_130 Hb_004055_150 Hb_004055_150 Hb_000207_130--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_000207_130--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000207_130--Hb_000853_230 Hb_032208_040 Hb_032208_040 Hb_000207_130--Hb_032208_040 Hb_106552_050 Hb_106552_050 Hb_000207_130--Hb_106552_050 Hb_002078_020 Hb_002078_020 Hb_000207_130--Hb_002078_020 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_004055_150--Hb_000853_230 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030 Hb_020367_050 Hb_020367_050 Hb_032208_040--Hb_020367_050 Hb_001247_130 Hb_001247_130 Hb_032208_040--Hb_001247_130 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_032208_040--Hb_006960_050 Hb_032208_040--Hb_001926_030 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_106552_050--Hb_004055_150 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_002078_020--Hb_000853_230 Hb_002078_020--Hb_001926_030 Hb_002078_020--Hb_004055_150 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.674 22.4116 25.1931 17.7525 38.6183 29.2537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4761 26.9322 23.6151 23.639 10.4425

CAGE analysis