Hb_000207_160

Information

Type transcription factor
Description TF Family: NAC
Location Contig207: 189303-192392
Sequence    

Annotation

kegg
ID rcu:RCOM_0685960
description NAC domain-containing protein, putative
nr
ID XP_011038131.1
description PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
swissprot
ID Q9C8W9
description NAC domain-containing protein 30 OS=Arabidopsis thaliana GN=NAC030 PE=1 SV=1
trembl
ID E5KUI2
description Transcription factor OS=Populus trichocarpa GN=WND6B PE=2 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21317: 189285-189545 , PASA_asmbl_21318: 190724-191459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_160 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
2 Hb_003125_090 0.0810430095 - - -
3 Hb_015824_010 0.1099751293 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
4 Hb_096224_050 0.1178111338 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
5 Hb_000373_010 0.1182658911 - - ATP binding protein, putative [Ricinus communis]
6 Hb_005305_070 0.1206275973 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
7 Hb_000027_110 0.1282431549 - - wall-associated kinase, putative [Ricinus communis]
8 Hb_001699_140 0.1298744442 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_033363_030 0.1310489242 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
10 Hb_000644_010 0.1316816967 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_002407_090 0.1321780704 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
12 Hb_000608_290 0.1322380347 - - thioredoxin f-type, putative [Ricinus communis]
13 Hb_000270_090 0.1326449861 - - nitrate transporter, putative [Ricinus communis]
14 Hb_011104_020 0.1328804408 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
15 Hb_007904_110 0.1336533174 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
16 Hb_004979_070 0.1366301871 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
17 Hb_007718_030 0.1374563853 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000116_530 0.1378131623 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
19 Hb_186844_010 0.1378497835 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_025557_060 0.1387227711 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000207_160 Hb_000207_160 Hb_003125_090 Hb_003125_090 Hb_000207_160--Hb_003125_090 Hb_015824_010 Hb_015824_010 Hb_000207_160--Hb_015824_010 Hb_096224_050 Hb_096224_050 Hb_000207_160--Hb_096224_050 Hb_000373_010 Hb_000373_010 Hb_000207_160--Hb_000373_010 Hb_005305_070 Hb_005305_070 Hb_000207_160--Hb_005305_070 Hb_000027_110 Hb_000027_110 Hb_000207_160--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_003125_090--Hb_033363_030 Hb_003125_090--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_003125_090--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_003125_090--Hb_007904_110 Hb_004979_080 Hb_004979_080 Hb_003125_090--Hb_004979_080 Hb_000042_310 Hb_000042_310 Hb_015824_010--Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_015824_010--Hb_004374_100 Hb_144045_010 Hb_144045_010 Hb_015824_010--Hb_144045_010 Hb_000280_030 Hb_000280_030 Hb_015824_010--Hb_000280_030 Hb_015824_010--Hb_000027_110 Hb_096224_050--Hb_007904_110 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_000027_110 Hb_096224_050--Hb_033363_030 Hb_011028_030 Hb_011028_030 Hb_000373_010--Hb_011028_030 Hb_002155_020 Hb_002155_020 Hb_000373_010--Hb_002155_020 Hb_000373_010--Hb_000644_010 Hb_000680_130 Hb_000680_130 Hb_000373_010--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_000373_010--Hb_096224_050 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_005305_070--Hb_007904_110 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_000027_110--Hb_000644_010 Hb_000027_110--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_000027_110--Hb_005305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163983 0.427533 0.18782 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0402069 0 0.0485154 0.822118

CAGE analysis