Hb_000207_250

Information

Type -
Description -
Location Contig207: 332567-345076
Sequence    

Annotation

kegg
ID rcu:RCOM_0686650
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative
nr
ID XP_002526837.1
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
swissprot
ID Q94AH3
description Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1
trembl
ID B9SLG8
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative OS=Ricinus communis GN=RCOM_0686650 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable magnesium transporter nipa4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21328: 332618-345038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_250 0.0 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
2 Hb_004976_030 0.0656448297 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
3 Hb_000898_040 0.0709143125 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_001248_130 0.0713339523 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
5 Hb_189003_080 0.0724762426 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
6 Hb_000409_020 0.0770911283 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
7 Hb_000907_080 0.0780912685 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
8 Hb_000510_320 0.080395673 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
9 Hb_002811_360 0.0823865934 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
10 Hb_004109_090 0.0825961783 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000700_110 0.0827546644 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000000_250 0.0845236874 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
13 Hb_002026_180 0.0877788778 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_008695_210 0.0878739368 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_011918_080 0.0887495182 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_001789_090 0.0887525427 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
17 Hb_002016_110 0.0894329593 - - transducin family protein [Populus trichocarpa]
18 Hb_002154_030 0.0894634669 - - RNA binding protein, putative [Ricinus communis]
19 Hb_005625_020 0.0901988418 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_001898_220 0.0902496455 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_250 Hb_000207_250 Hb_004976_030 Hb_004976_030 Hb_000207_250--Hb_004976_030 Hb_000898_040 Hb_000898_040 Hb_000207_250--Hb_000898_040 Hb_001248_130 Hb_001248_130 Hb_000207_250--Hb_001248_130 Hb_189003_080 Hb_189003_080 Hb_000207_250--Hb_189003_080 Hb_000409_020 Hb_000409_020 Hb_000207_250--Hb_000409_020 Hb_000907_080 Hb_000907_080 Hb_000207_250--Hb_000907_080 Hb_000200_050 Hb_000200_050 Hb_004976_030--Hb_000200_050 Hb_154648_010 Hb_154648_010 Hb_004976_030--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_004976_030--Hb_000000_250 Hb_003996_020 Hb_003996_020 Hb_004976_030--Hb_003996_020 Hb_004109_190 Hb_004109_190 Hb_004976_030--Hb_004109_190 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_189003_080--Hb_002016_110 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_002026_180 Hb_002026_180 Hb_189003_080--Hb_002026_180 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_000409_020--Hb_002016_110 Hb_000907_080--Hb_008695_210 Hb_000907_080--Hb_189003_080 Hb_006915_050 Hb_006915_050 Hb_000907_080--Hb_006915_050 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000907_080--Hb_000409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7341 24.7596 14.9502 28.6175 41.8103 59.8625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.007 39.2393 74.9625 22.2381 14.934

CAGE analysis