Hb_000207_310

Information

Type -
Description -
Location Contig207: 399294-405598
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11500g
description POPTRDRAFT_914434; hypothetical protein
nr
ID XP_012072024.1
description PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
swissprot
ID O78458
description Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37 PE=3 SV=1
trembl
ID A0A067L2K4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05384 PE=4 SV=1
Gene Ontology
ID GO:0009535
description tetratricopeptide repeat

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_310 0.0 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
2 Hb_001828_160 0.0516844446 - - hypothetical protein F775_31105 [Aegilops tauschii]
3 Hb_000116_180 0.0601810817 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
4 Hb_002890_020 0.061115684 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
5 Hb_000913_050 0.0613818883 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
6 Hb_000029_130 0.0635182129 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
7 Hb_108216_040 0.0705782163 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
8 Hb_006620_020 0.0717992482 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
9 Hb_000320_200 0.073742092 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
10 Hb_022693_120 0.0739243954 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
11 Hb_000794_050 0.0746806522 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
12 Hb_002367_130 0.0755665973 - - UNC-50 family protein isoform 1 [Theobroma cacao]
13 Hb_000345_170 0.0774392981 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
14 Hb_007026_030 0.0782919754 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
15 Hb_001936_060 0.0783905819 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
16 Hb_002205_040 0.0789227819 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_001235_200 0.0797768842 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001599_030 0.0820651551 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
19 Hb_010381_060 0.0828426183 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
20 Hb_156973_010 0.0828914925 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000207_310 Hb_000207_310 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_001828_160--Hb_000913_050 Hb_021422_010 Hb_021422_010 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_001828_160--Hb_000116_180 Hb_001545_200 Hb_001545_200 Hb_001828_160--Hb_001545_200 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000913_050--Hb_000029_130 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_000640_320 Hb_000640_320 Hb_108216_040--Hb_000640_320 Hb_008143_030 Hb_008143_030 Hb_108216_040--Hb_008143_030 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03745 2.35256 2.2414 1.89429 6.04043 5.05263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88714 3.44702 2.40276 3.11773 2.56332

CAGE analysis