Hb_000207_390

Information

Type -
Description -
Location Contig207: 527748-552647
Sequence    

Annotation

kegg
ID rcu:RCOM_0956920
description hypothetical protein
nr
ID XP_012075937.1
description PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11970 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105637143

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21341: 527751-552551 , PASA_asmbl_21342: 531800-532043 , PASA_asmbl_21344: 548435-548712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_390 0.0 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
2 Hb_007163_090 0.0558108725 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_001797_050 0.057706653 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
4 Hb_002200_130 0.0606793137 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
5 Hb_002154_030 0.065375476 - - RNA binding protein, putative [Ricinus communis]
6 Hb_001301_200 0.0682427716 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
7 Hb_000803_190 0.0701469814 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_023344_030 0.0727348503 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_000062_240 0.0750485944 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
10 Hb_004204_080 0.0755523321 - - diacylglycerol kinase, theta, putative [Ricinus communis]
11 Hb_001252_080 0.0765837198 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
12 Hb_000160_040 0.0771780417 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_000230_080 0.0777202454 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_001143_160 0.0794427957 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
15 Hb_181235_010 0.0798622663 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_004447_060 0.0819777581 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
17 Hb_003362_040 0.0843393045 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
18 Hb_002307_100 0.0851089603 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
19 Hb_006332_010 0.0852788233 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
20 Hb_000577_010 0.0853499243 - - hypothetical protein JCGZ_23887 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_390 Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_000207_390--Hb_007163_090 Hb_001797_050 Hb_001797_050 Hb_000207_390--Hb_001797_050 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_001301_200 Hb_001301_200 Hb_000207_390--Hb_001301_200 Hb_000803_190 Hb_000803_190 Hb_000207_390--Hb_000803_190 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_007163_090--Hb_001301_200 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_001797_050--Hb_000803_190 Hb_003362_040 Hb_003362_040 Hb_002200_130--Hb_003362_040 Hb_002200_130--Hb_001301_200 Hb_000048_140 Hb_000048_140 Hb_002200_130--Hb_000048_140 Hb_028639_010 Hb_028639_010 Hb_002200_130--Hb_028639_010 Hb_002200_130--Hb_001797_050 Hb_181235_010 Hb_181235_010 Hb_002154_030--Hb_181235_010 Hb_000062_240 Hb_000062_240 Hb_002154_030--Hb_000062_240 Hb_002154_030--Hb_000803_190 Hb_002154_030--Hb_001301_200 Hb_002154_030--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_004734_060 Hb_004734_060 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.554 18.9672 8.06563 13.3351 33.9167 43.2012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1898 17.7441 30.5996 19.8488 8.89453

CAGE analysis