Hb_000207_420

Information

Type -
Description -
Location Contig207: 585988-588529
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11600g
description POPTRDRAFT_249770; hypothetical protein
nr
ID XP_002326006.2
description hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9IQL5
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0019s11600g PE=3 SV=2
Gene Ontology
ID GO:0016021
description mate efflux family protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21347: 586252-587713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_420 0.0 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
2 Hb_002311_430 0.1717932975 - - hypothetical protein JCGZ_18918 [Jatropha curcas]
3 Hb_001481_110 0.1752519698 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
4 Hb_001610_050 0.1900520535 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
5 Hb_000805_330 0.1928451144 - - PREDICTED: ricin-like [Elaeis guineensis]
6 Hb_006816_540 0.1966156769 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
7 Hb_000431_030 0.1972998847 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
8 Hb_005183_010 0.1980947446 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
9 Hb_055993_010 0.1998898312 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
10 Hb_000987_080 0.2013012566 - - light-inducible protein atls1, putative [Ricinus communis]
11 Hb_009787_020 0.2045528573 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
12 Hb_003371_260 0.2118476673 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
13 Hb_007885_120 0.2132110405 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
14 Hb_003031_070 0.2148537239 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
15 Hb_001934_010 0.2150026885 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_001227_010 0.2153817127 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
17 Hb_005687_060 0.2163299529 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
18 Hb_047725_010 0.2183245004 - - ceramidase, putative [Ricinus communis]
19 Hb_020301_010 0.2230490808 - - cytochrome P450, putative [Ricinus communis]
20 Hb_005892_010 0.2257109867 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_420 Hb_000207_420 Hb_002311_430 Hb_002311_430 Hb_000207_420--Hb_002311_430 Hb_001481_110 Hb_001481_110 Hb_000207_420--Hb_001481_110 Hb_001610_050 Hb_001610_050 Hb_000207_420--Hb_001610_050 Hb_000805_330 Hb_000805_330 Hb_000207_420--Hb_000805_330 Hb_006816_540 Hb_006816_540 Hb_000207_420--Hb_006816_540 Hb_000431_030 Hb_000431_030 Hb_000207_420--Hb_000431_030 Hb_000987_080 Hb_000987_080 Hb_002311_430--Hb_000987_080 Hb_003031_070 Hb_003031_070 Hb_002311_430--Hb_003031_070 Hb_009787_020 Hb_009787_020 Hb_002311_430--Hb_009787_020 Hb_077562_010 Hb_077562_010 Hb_002311_430--Hb_077562_010 Hb_002311_430--Hb_006816_540 Hb_005687_060 Hb_005687_060 Hb_001481_110--Hb_005687_060 Hb_000369_050 Hb_000369_050 Hb_001481_110--Hb_000369_050 Hb_001481_110--Hb_001610_050 Hb_001481_110--Hb_006816_540 Hb_007304_100 Hb_007304_100 Hb_001481_110--Hb_007304_100 Hb_001481_110--Hb_000987_080 Hb_000702_040 Hb_000702_040 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_005892_010 Hb_005892_010 Hb_001610_050--Hb_005892_010 Hb_002639_120 Hb_002639_120 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_000805_330--Hb_007304_100 Hb_000008_040 Hb_000008_040 Hb_000805_330--Hb_000008_040 Hb_000318_320 Hb_000318_320 Hb_000805_330--Hb_000318_320 Hb_008725_190 Hb_008725_190 Hb_000805_330--Hb_008725_190 Hb_005183_010 Hb_005183_010 Hb_000805_330--Hb_005183_010 Hb_007007_110 Hb_007007_110 Hb_000805_330--Hb_007007_110 Hb_007885_120 Hb_007885_120 Hb_006816_540--Hb_007885_120 Hb_161954_010 Hb_161954_010 Hb_006816_540--Hb_161954_010 Hb_006816_540--Hb_006890_050 Hb_004767_010 Hb_004767_010 Hb_006816_540--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_006816_540--Hb_002393_060 Hb_006816_540--Hb_001227_010 Hb_002248_090 Hb_002248_090 Hb_000431_030--Hb_002248_090 Hb_003371_260 Hb_003371_260 Hb_000431_030--Hb_003371_260 Hb_002239_030 Hb_002239_030 Hb_000431_030--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_000431_030--Hb_024857_010 Hb_000101_140 Hb_000101_140 Hb_000431_030--Hb_000101_140 Hb_012760_060 Hb_012760_060 Hb_000431_030--Hb_012760_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.834828 0.00997142 0.687925 0.0770604 0.0535335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0862529 0.0502839

CAGE analysis