Hb_000208_120

Information

Type -
Description -
Location Contig208: 139436-148652
Sequence    

Annotation

kegg
ID cit:102620580
description early endosome antigen 1-like
nr
ID XP_012090382.1
description PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LK42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21487: 139516-140676 , PASA_asmbl_21488: 140710-143170 , PASA_asmbl_21491: 144107-144581 , PASA_asmbl_21492: 144688-144795 , PASA_asmbl_21493: 144950-148640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_120 0.0 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
2 Hb_185447_010 0.1208336667 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
3 Hb_000505_010 0.1285066861 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
4 Hb_001898_160 0.1441433722 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
5 Hb_002284_310 0.14466596 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
6 Hb_000270_260 0.1448006869 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
7 Hb_000735_130 0.1473865212 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001268_420 0.149938208 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
9 Hb_000160_300 0.1531015045 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
10 Hb_000345_390 0.1537587465 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
11 Hb_101832_010 0.1635235714 - - nitrate transporter, putative [Ricinus communis]
12 Hb_006371_010 0.1647274342 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
13 Hb_003020_020 0.166246635 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
14 Hb_116349_100 0.1666262199 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
15 Hb_027654_060 0.1667885339 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
16 Hb_015057_060 0.1673492536 - - -
17 Hb_075751_010 0.1682123181 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
18 Hb_111985_050 0.1685341004 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
19 Hb_008173_020 0.171254934 - - glutathione peroxidase [Populus euphratica]
20 Hb_006452_170 0.1718462387 - - -

Gene co-expression network

sample Hb_000208_120 Hb_000208_120 Hb_185447_010 Hb_185447_010 Hb_000208_120--Hb_185447_010 Hb_000505_010 Hb_000505_010 Hb_000208_120--Hb_000505_010 Hb_001898_160 Hb_001898_160 Hb_000208_120--Hb_001898_160 Hb_002284_310 Hb_002284_310 Hb_000208_120--Hb_002284_310 Hb_000270_260 Hb_000270_260 Hb_000208_120--Hb_000270_260 Hb_000735_130 Hb_000735_130 Hb_000208_120--Hb_000735_130 Hb_003976_020 Hb_003976_020 Hb_185447_010--Hb_003976_020 Hb_114310_110 Hb_114310_110 Hb_185447_010--Hb_114310_110 Hb_018133_090 Hb_018133_090 Hb_185447_010--Hb_018133_090 Hb_001439_060 Hb_001439_060 Hb_185447_010--Hb_001439_060 Hb_000608_170 Hb_000608_170 Hb_185447_010--Hb_000608_170 Hb_001396_180 Hb_001396_180 Hb_000505_010--Hb_001396_180 Hb_011316_040 Hb_011316_040 Hb_000505_010--Hb_011316_040 Hb_000236_070 Hb_000236_070 Hb_000505_010--Hb_000236_070 Hb_003376_040 Hb_003376_040 Hb_000505_010--Hb_003376_040 Hb_000096_090 Hb_000096_090 Hb_000505_010--Hb_000096_090 Hb_116349_100 Hb_116349_100 Hb_000505_010--Hb_116349_100 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020 Hb_000603_230 Hb_000603_230 Hb_002284_310--Hb_000603_230 Hb_003992_170 Hb_003992_170 Hb_002284_310--Hb_003992_170 Hb_000331_460 Hb_000331_460 Hb_002284_310--Hb_000331_460 Hb_002871_190 Hb_002871_190 Hb_002284_310--Hb_002871_190 Hb_004225_080 Hb_004225_080 Hb_002284_310--Hb_004225_080 Hb_004346_030 Hb_004346_030 Hb_002284_310--Hb_004346_030 Hb_000302_180 Hb_000302_180 Hb_000270_260--Hb_000302_180 Hb_000270_260--Hb_082609_010 Hb_012022_150 Hb_012022_150 Hb_000270_260--Hb_012022_150 Hb_000329_320 Hb_000329_320 Hb_000270_260--Hb_000329_320 Hb_111985_050 Hb_111985_050 Hb_000270_260--Hb_111985_050 Hb_001322_140 Hb_001322_140 Hb_000270_260--Hb_001322_140 Hb_000062_340 Hb_000062_340 Hb_000735_130--Hb_000062_340 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_044662_070 Hb_044662_070 Hb_000735_130--Hb_044662_070 Hb_003376_120 Hb_003376_120 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7618 0.790385 9.61733 3.12894 7.08879 7.79878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8206 12.5848 19.3013 2.28688 14.0674

CAGE analysis