Hb_000208_210

Information

Type -
Description -
Location Contig208: 286352-299433
Sequence    

Annotation

kegg
ID rcu:RCOM_0350300
description Far upstream element-binding protein, putative (EC:3.1.2.15)
nr
ID XP_012090458.1
description PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
swissprot
ID Q9LZ82
description Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1
trembl
ID A0A067L9D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01571 PE=4 SV=1
Gene Ontology
ID GO:0003727
description rna-binding protein nova-2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21498: 286434-300479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_210 0.0 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
2 Hb_000138_140 0.0781447086 - - hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
3 Hb_019654_040 0.0785281171 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
4 Hb_003549_090 0.0797279774 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_001488_410 0.0798616085 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
6 Hb_004994_040 0.0804297884 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
7 Hb_001269_230 0.0813419816 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
8 Hb_004007_220 0.0814778312 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
9 Hb_000470_070 0.0821362194 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
10 Hb_017700_010 0.0831302974 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
11 Hb_000007_280 0.0846690591 - - hypothetical protein VITISV_000066 [Vitis vinifera]
12 Hb_001488_200 0.0852607855 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
13 Hb_143395_010 0.0854885815 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
14 Hb_003126_100 0.0873212753 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
15 Hb_004102_140 0.0879415593 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000648_100 0.089911523 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_032278_020 0.0899479211 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
18 Hb_011174_090 0.0908211234 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
19 Hb_001025_080 0.0917352726 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
20 Hb_058999_030 0.092336429 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000208_210 Hb_000208_210 Hb_000138_140 Hb_000138_140 Hb_000208_210--Hb_000138_140 Hb_019654_040 Hb_019654_040 Hb_000208_210--Hb_019654_040 Hb_003549_090 Hb_003549_090 Hb_000208_210--Hb_003549_090 Hb_001488_410 Hb_001488_410 Hb_000208_210--Hb_001488_410 Hb_004994_040 Hb_004994_040 Hb_000208_210--Hb_004994_040 Hb_001269_230 Hb_001269_230 Hb_000208_210--Hb_001269_230 Hb_000138_140--Hb_019654_040 Hb_002398_030 Hb_002398_030 Hb_000138_140--Hb_002398_030 Hb_000138_140--Hb_003549_090 Hb_000138_140--Hb_004994_040 Hb_001935_110 Hb_001935_110 Hb_000138_140--Hb_001935_110 Hb_000470_070 Hb_000470_070 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_019654_040--Hb_001935_110 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_011174_090 Hb_011174_090 Hb_004994_040--Hb_011174_090 Hb_007592_030 Hb_007592_030 Hb_004994_040--Hb_007592_030 Hb_000618_030 Hb_000618_030 Hb_004994_040--Hb_000618_030 Hb_002304_090 Hb_002304_090 Hb_004994_040--Hb_002304_090 Hb_001444_010 Hb_001444_010 Hb_004994_040--Hb_001444_010 Hb_009627_010 Hb_009627_010 Hb_004994_040--Hb_009627_010 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1335 9.59096 18.1373 13.5214 22.7032 28.0018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.97052 10.7034 13.088 15.3235 9.07148

CAGE analysis