Hb_000208_220

Information

Type -
Description -
Location Contig208: 307908-308546
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21500: 307675-308639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_220 0.0 - - -
2 Hb_002553_030 0.0946860689 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
3 Hb_001300_090 0.1050017698 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
4 Hb_161881_010 0.1113837637 - - laccase, putative [Ricinus communis]
5 Hb_184798_060 0.1151640443 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001761_160 0.12421102 - - hypothetical protein VITISV_019364 [Vitis vinifera]
7 Hb_001081_050 0.1325237229 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
8 Hb_000776_120 0.1327254571 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
9 Hb_003414_020 0.1340360221 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
10 Hb_005194_050 0.1366156506 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_001508_010 0.1386449005 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000373_140 0.1394146068 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
13 Hb_027638_010 0.1416998934 - - Protein KES1, putative [Ricinus communis]
14 Hb_004030_010 0.1424594421 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
15 Hb_171685_070 0.1441782639 - - -
16 Hb_079902_010 0.1485706185 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
17 Hb_002010_010 0.1523744221 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_012528_040 0.1527917896 - - -
19 Hb_000123_070 0.1531191274 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_003732_030 0.1665445505 - - gibberellin 20-oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000208_220 Hb_000208_220 Hb_002553_030 Hb_002553_030 Hb_000208_220--Hb_002553_030 Hb_001300_090 Hb_001300_090 Hb_000208_220--Hb_001300_090 Hb_161881_010 Hb_161881_010 Hb_000208_220--Hb_161881_010 Hb_184798_060 Hb_184798_060 Hb_000208_220--Hb_184798_060 Hb_001761_160 Hb_001761_160 Hb_000208_220--Hb_001761_160 Hb_001081_050 Hb_001081_050 Hb_000208_220--Hb_001081_050 Hb_001508_010 Hb_001508_010 Hb_002553_030--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_002553_030--Hb_000373_140 Hb_003414_020 Hb_003414_020 Hb_002553_030--Hb_003414_020 Hb_002553_030--Hb_184798_060 Hb_002553_030--Hb_001761_160 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_004643_020 Hb_004643_020 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_006827_010 Hb_006827_010 Hb_001300_090--Hb_006827_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_002010_010 Hb_002010_010 Hb_161881_010--Hb_002010_010 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_184798_060--Hb_001761_160 Hb_184798_060--Hb_001081_050 Hb_184798_060--Hb_003414_020 Hb_003144_010 Hb_003144_010 Hb_184798_060--Hb_003144_010 Hb_001761_160--Hb_003414_020 Hb_004924_040 Hb_004924_040 Hb_001761_160--Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_001761_160--Hb_003058_160 Hb_027638_010 Hb_027638_010 Hb_001081_050--Hb_027638_010 Hb_001081_050--Hb_003144_010 Hb_001081_050--Hb_161881_010 Hb_004407_030 Hb_004407_030 Hb_001081_050--Hb_004407_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.28467 4.53433 1.84792 0.0846204 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0976332 79.5526

CAGE analysis