Hb_000208_260

Information

Type -
Description -
Location Contig208: 341424-349842
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03110g
description POPTRDRAFT_563656; hypothetical protein
nr
ID XP_012090508.1
description PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q9MA55
description Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
trembl
ID A0A067LL40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01574 PE=4 SV=1
Gene Ontology
ID GO:0005634
description acyl- -binding domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21503: 341507-349999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_260 0.0 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
2 Hb_009049_020 0.0593266877 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
3 Hb_058999_030 0.0676467403 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
4 Hb_002398_030 0.0693554084 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_001188_060 0.0707716618 - - -
6 Hb_002248_110 0.0769220834 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
7 Hb_002942_060 0.0794318842 - - RNA-binding protein, putative [Ricinus communis]
8 Hb_029904_020 0.0807765475 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
9 Hb_003549_090 0.0810418515 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
10 Hb_001948_130 0.0816029932 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
11 Hb_028227_010 0.0837844804 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
12 Hb_000107_210 0.0873321155 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
13 Hb_008120_030 0.0882523341 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
14 Hb_004659_020 0.0896797273 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
15 Hb_017295_010 0.0897093739 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
16 Hb_003688_090 0.0911624417 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
17 Hb_012215_010 0.0914157437 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
18 Hb_003010_020 0.0934365687 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001635_160 0.0948754614 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
20 Hb_001269_230 0.0948886427 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]

Gene co-expression network

sample Hb_000208_260 Hb_000208_260 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_058999_030 Hb_058999_030 Hb_000208_260--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_002248_110 Hb_002248_110 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_058999_030--Hb_002398_030 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_001269_230 Hb_001269_230 Hb_001188_060--Hb_001269_230 Hb_001205_250 Hb_001205_250 Hb_001188_060--Hb_001205_250 Hb_001584_140 Hb_001584_140 Hb_001188_060--Hb_001584_140 Hb_001188_060--Hb_002398_030 Hb_001188_060--Hb_002248_110 Hb_002248_110--Hb_001269_230 Hb_002248_110--Hb_017700_010 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020 Hb_002942_060--Hb_002398_030 Hb_002942_060--Hb_000445_050 Hb_002942_060--Hb_008120_030 Hb_002942_060--Hb_058999_030 Hb_002942_060--Hb_007592_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.87 7.79501 16.1477 19.6464 14.2231 25.1347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46095 6.33269 9.68943 11.031 12.7601

CAGE analysis