Hb_000208_280

Information

Type transcription factor
Description TF Family: NAC
Location Contig208: 367313-371368
Sequence    

Annotation

kegg
ID rcu:RCOM_0351150
description hypothetical protein
nr
ID XP_012090539.1
description PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
swissprot
ID Q84K00
description NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2
trembl
ID R4NHQ2
description NAC transcription factor 044 OS=Jatropha curcas GN=JCGZ_01577 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21505: 367281-371397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_280 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
2 Hb_000487_270 0.0702579251 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
3 Hb_000192_080 0.0728696532 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
4 Hb_012114_100 0.0742095418 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
5 Hb_000140_350 0.0757223881 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001679_050 0.0765281772 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
7 Hb_000836_280 0.077741211 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
8 Hb_001014_210 0.0781434049 - - CYP51 [Hevea brasiliensis]
9 Hb_006452_120 0.0794541155 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_000574_450 0.0796672786 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
11 Hb_010515_020 0.0804362063 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
12 Hb_029243_030 0.0805081786 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_003683_020 0.080727003 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_004990_010 0.0825122 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
15 Hb_004102_170 0.0829410292 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
16 Hb_007638_030 0.084214348 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_002989_020 0.0843497645 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
18 Hb_011249_070 0.0848373204 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
19 Hb_001500_140 0.0850355809 - - pelota, putative [Ricinus communis]
20 Hb_002026_210 0.0850719776 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]

Gene co-expression network

sample Hb_000208_280 Hb_000208_280 Hb_000487_270 Hb_000487_270 Hb_000208_280--Hb_000487_270 Hb_000192_080 Hb_000192_080 Hb_000208_280--Hb_000192_080 Hb_012114_100 Hb_012114_100 Hb_000208_280--Hb_012114_100 Hb_000140_350 Hb_000140_350 Hb_000208_280--Hb_000140_350 Hb_001679_050 Hb_001679_050 Hb_000208_280--Hb_001679_050 Hb_000836_280 Hb_000836_280 Hb_000208_280--Hb_000836_280 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000487_270--Hb_001679_050 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000009_560 Hb_000009_560 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_000146_040 Hb_000146_040 Hb_000140_350--Hb_000146_040 Hb_000140_350--Hb_000836_280 Hb_004102_170 Hb_004102_170 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000477_100 Hb_000477_100 Hb_000140_350--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_001679_050--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_001679_050--Hb_011063_050 Hb_000340_530 Hb_000340_530 Hb_001679_050--Hb_000340_530 Hb_001679_050--Hb_004990_010 Hb_001679_050--Hb_008279_040 Hb_001679_050--Hb_000574_450 Hb_013057_020 Hb_013057_020 Hb_000836_280--Hb_013057_020 Hb_023344_150 Hb_023344_150 Hb_000836_280--Hb_023344_150 Hb_000836_280--Hb_012114_100 Hb_000836_280--Hb_000146_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5935 19.9015 10.8701 33.6324 14.2894 22.266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5177 16.7036 16.8867 19.7361 19.3816

CAGE analysis