Hb_000209_020

Information

Type -
Description -
Location Contig209: 35625-40710
Sequence    

Annotation

kegg
ID rcu:RCOM_0611480
description hypothetical protein
nr
ID XP_012081849.1
description PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
swissprot
ID P0CB21
description Uncharacterized protein At4g26450 OS=Arabidopsis thaliana GN=At4g26450 PE=4 SV=1
trembl
ID A0A067K366
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19221 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21608: 37852-38440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000209_020 0.0 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
2 Hb_004734_060 0.0693272982 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
3 Hb_000184_130 0.0751802388 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
4 Hb_005324_010 0.0805326914 - - Chaperone protein dnaJ, putative [Ricinus communis]
5 Hb_033152_080 0.081900397 - - RNA-binding protein Nova-1, putative [Ricinus communis]
6 Hb_000139_240 0.0887592295 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
7 Hb_001943_010 0.0909926437 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
8 Hb_000808_180 0.0940103464 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
9 Hb_001771_130 0.0952381373 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
10 Hb_001437_180 0.095677048 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
11 Hb_000370_030 0.0972854121 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
12 Hb_001516_100 0.0973389864 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000284_210 0.0985093873 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005306_130 0.0992567935 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000011_080 0.101210143 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
16 Hb_000300_280 0.1017296078 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_000915_050 0.1039191329 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005122_080 0.1048743297 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
19 Hb_000866_030 0.1066211494 - - hypothetical protein RCOM_1615820 [Ricinus communis]
20 Hb_002270_010 0.107111099 - - Chaperone protein dnaJ, putative [Ricinus communis]

Gene co-expression network

sample Hb_000209_020 Hb_000209_020 Hb_004734_060 Hb_004734_060 Hb_000209_020--Hb_004734_060 Hb_000184_130 Hb_000184_130 Hb_000209_020--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000209_020--Hb_005324_010 Hb_033152_080 Hb_033152_080 Hb_000209_020--Hb_033152_080 Hb_000139_240 Hb_000139_240 Hb_000209_020--Hb_000139_240 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_004734_060--Hb_000184_130 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_005324_010--Hb_004734_060 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_005324_010--Hb_033152_080 Hb_033152_080--Hb_000803_190 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130 Hb_000139_240--Hb_005324_010 Hb_000139_240--Hb_005306_130 Hb_002270_010 Hb_002270_010 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_000139_240--Hb_004734_060 Hb_005205_020 Hb_005205_020 Hb_001943_010--Hb_005205_020 Hb_001943_010--Hb_000370_030 Hb_001943_010--Hb_000184_130 Hb_025012_010 Hb_025012_010 Hb_001943_010--Hb_025012_010 Hb_000316_030 Hb_000316_030 Hb_001943_010--Hb_000316_030 Hb_001771_130 Hb_001771_130 Hb_001943_010--Hb_001771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5826 13.1047 1.6495 4.35482 13.4649 25.3572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8229 9.14854 10.5141 11.8478 2.84431

CAGE analysis