Hb_000209_070

Information

Type -
Description -
Location Contig209: 148336-156049
Sequence    

Annotation

kegg
ID rcu:RCOM_0363720
description voltage-gated clc-type chloride channel, putative
nr
ID XP_012081851.1
description PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
swissprot
ID Q8RXR2
description Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2
trembl
ID A0A067KB63
description Chloride channel protein OS=Jatropha curcas GN=JCGZ_19223 PE=3 SV=1
Gene Ontology
ID GO:0005794
description chloride channel protein clc-f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21610: 148418-156051 , PASA_asmbl_21611: 152474-152758
cDNA
(Sanger)
(ID:Location)		 049_F05.ab1: 148418-148917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000209_070 0.0 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
2 Hb_001473_090 0.0572032193 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
3 Hb_022250_110 0.0649834921 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
4 Hb_000160_290 0.0691121589 - - unnamed protein product [Vitis vinifera]
5 Hb_001675_070 0.0696141382 - - eukaryotic translation elongation factor, putative [Ricinus communis]
6 Hb_000029_320 0.0704835794 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
7 Hb_003464_020 0.0718840763 - - srpk, putative [Ricinus communis]
8 Hb_000347_130 0.0720586664 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
9 Hb_015099_010 0.072643049 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
10 Hb_003124_130 0.0762548434 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
11 Hb_002078_100 0.0778246759 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
12 Hb_000567_010 0.0796611953 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_005731_090 0.0805023773 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
14 Hb_002235_160 0.0807941741 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
15 Hb_174821_010 0.0811752353 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
16 Hb_000023_190 0.0812096341 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_015763_030 0.0813396332 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004218_240 0.0827601698 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
19 Hb_004970_160 0.0829764619 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
20 Hb_000785_040 0.083269322 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]

Gene co-expression network

sample Hb_000209_070 Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_001541_080 Hb_001541_080 Hb_001675_070--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_001675_070--Hb_001143_110 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130 Hb_002070_070 Hb_002070_070 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_001473_090 Hb_000029_320--Hb_000329_490 Hb_000023_190 Hb_000023_190 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8296 13.8982 8.63925 13.8245 27.9139 30.5157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59716 5.36228 8.19228 15.0411 10.4241

CAGE analysis