Hb_000209_090

Information

Type -
Description -
Location Contig209: 175197-178522
Sequence    

Annotation

kegg
ID atr:s00048p00227650
description AMTR_s00048p00227650; hypothetical protein
nr
ID XP_012074809.1
description PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
swissprot
ID P60040
description 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=2 SV=1
trembl
ID A0A067KHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08960 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21612: 175206-178515 , PASA_asmbl_21613: 175206-178515
cDNA
(Sanger)
(ID:Location)		 025_L19.ab1: 175206-178215 , 038_H18.ab1: 175206-175825 , 051_O04.ab1: 175206-178119

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000209_090 0.0 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
2 Hb_000976_270 0.0754666189 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
3 Hb_003605_070 0.078956353 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
4 Hb_001741_140 0.0797492241 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_007534_040 0.0800401236 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
6 Hb_004044_020 0.0820538221 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
7 Hb_004525_100 0.0836258658 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
8 Hb_000176_110 0.0839603986 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
9 Hb_000236_300 0.0855900986 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
10 Hb_003544_090 0.0893492394 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
11 Hb_000088_200 0.0896481125 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_004204_200 0.090939957 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
13 Hb_000175_390 0.0926183919 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
14 Hb_001623_580 0.093503007 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_001663_110 0.0935585774 - - RNA binding protein, putative [Ricinus communis]
16 Hb_143629_010 0.0953935048 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_003453_020 0.0962380446 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
18 Hb_004198_010 0.0967416148 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
19 Hb_000997_020 0.0971176766 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
20 Hb_000186_280 0.097476681 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000209_090 Hb_000209_090 Hb_000976_270 Hb_000976_270 Hb_000209_090--Hb_000976_270 Hb_003605_070 Hb_003605_070 Hb_000209_090--Hb_003605_070 Hb_001741_140 Hb_001741_140 Hb_000209_090--Hb_001741_140 Hb_007534_040 Hb_007534_040 Hb_000209_090--Hb_007534_040 Hb_004044_020 Hb_004044_020 Hb_000209_090--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000209_090--Hb_004525_100 Hb_001663_110 Hb_001663_110 Hb_000976_270--Hb_001663_110 Hb_000205_120 Hb_000205_120 Hb_000976_270--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000976_270--Hb_004447_030 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_005288_160 Hb_005288_160 Hb_003605_070--Hb_005288_160 Hb_001623_580 Hb_001623_580 Hb_003605_070--Hb_001623_580 Hb_001016_060 Hb_001016_060 Hb_003605_070--Hb_001016_060 Hb_002276_190 Hb_002276_190 Hb_003605_070--Hb_002276_190 Hb_000847_070 Hb_000847_070 Hb_003605_070--Hb_000847_070 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050 Hb_175612_010 Hb_175612_010 Hb_007534_040--Hb_175612_010 Hb_000035_400 Hb_000035_400 Hb_007534_040--Hb_000035_400 Hb_000175_390 Hb_000175_390 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_001754_170 Hb_001754_170 Hb_007534_040--Hb_001754_170 Hb_000088_200 Hb_000088_200 Hb_004044_020--Hb_000088_200 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_000236_280 Hb_000236_280 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004044_020--Hb_004525_100 Hb_004525_100--Hb_000088_200 Hb_004525_100--Hb_000236_280 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
745.895 148.025 168.203 135.94 786.205 859.032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
336.346 447.51 195.781 220.403 91.0977

CAGE analysis