Hb_000209_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig209: 179724-185069
Sequence    

Annotation

kegg
ID rcu:RCOM_0363740
description hypothetical protein
nr
ID XP_012081857.1
description PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9FG77
description Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1
trembl
ID M9TIF0
description Uncharacterized protein OS=Jatropha curcas GN=WRKY11 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21615: 183329-184657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000209_100 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
2 Hb_001642_070 0.0868954539 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
3 Hb_006916_110 0.0924957281 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
4 Hb_000535_050 0.0933623261 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
5 Hb_011925_020 0.0976518618 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_005074_020 0.0979759454 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
7 Hb_016347_010 0.0991045798 - - protein transporter, putative [Ricinus communis]
8 Hb_001586_030 0.0991914615 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
9 Hb_007904_300 0.0996290413 - - copine, putative [Ricinus communis]
10 Hb_000345_320 0.1018799616 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
11 Hb_000190_090 0.1042852066 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
12 Hb_000059_240 0.1044832597 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
13 Hb_010863_010 0.1046544469 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
14 Hb_012022_080 0.1046842383 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_004837_280 0.1054462414 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
16 Hb_001691_200 0.1056828858 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
17 Hb_021576_010 0.1064328607 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
18 Hb_004450_070 0.1073343283 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
19 Hb_011883_020 0.1082715269 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_007441_280 0.1089951752 - - hypothetical protein JCGZ_14672 [Jatropha curcas]

Gene co-expression network

sample Hb_000209_100 Hb_000209_100 Hb_001642_070 Hb_001642_070 Hb_000209_100--Hb_001642_070 Hb_006916_110 Hb_006916_110 Hb_000209_100--Hb_006916_110 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_005074_020 Hb_005074_020 Hb_000209_100--Hb_005074_020 Hb_016347_010 Hb_016347_010 Hb_000209_100--Hb_016347_010 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_000666_010 Hb_000666_010 Hb_000535_050--Hb_000666_010 Hb_007904_300 Hb_007904_300 Hb_000535_050--Hb_007904_300 Hb_004218_180 Hb_004218_180 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_001586_030 Hb_001586_030 Hb_000535_050--Hb_001586_030 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180 Hb_000049_250 Hb_000049_250 Hb_011925_020--Hb_000049_250 Hb_011925_020--Hb_005074_020 Hb_000271_120 Hb_000271_120 Hb_011925_020--Hb_000271_120 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_016347_010--Hb_000363_040 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_016347_010--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4395 6.98119 5.93349 7.86536 1.76277 3.38688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88317 3.87614 5.1142 13.8113 7.68115

CAGE analysis