Hb_000210_020

Information

Type transcription factor
Description TF Family: OFP
Location Contig210: 23867-24652
Sequence    

Annotation

kegg
ID tcc:TCM_022847
description Ovate family protein 13, putative
nr
ID XP_007027918.1
description Ovate family protein 13, putative [Theobroma cacao]
swissprot
ID Q9FMC8
description Transcription repressor OFP13 OS=Arabidopsis thaliana GN=OFP13 PE=2 SV=1
trembl
ID A0A061ETM5
description Ovate family protein 13, putative OS=Theobroma cacao GN=TCM_022847 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_I17.ab1: 23817-24557

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_020 0.0 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
2 Hb_003836_040 0.0318927142 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
3 Hb_003605_170 0.0375143276 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
4 Hb_002284_290 0.0463595223 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_005797_020 0.0466550213 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
6 Hb_000053_010 0.0471465459 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
7 Hb_004464_040 0.0472557531 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
8 Hb_000297_190 0.0473816328 - - cell wall invertase [Manihot esculenta]
9 Hb_011433_010 0.0495714658 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
10 Hb_000174_120 0.0504946612 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_000977_250 0.0509537833 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_002434_040 0.0516176487 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
13 Hb_000834_160 0.0531333124 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
14 Hb_014361_160 0.0532724286 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
15 Hb_009692_050 0.0550479852 - - -
16 Hb_003598_070 0.055203735 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023313_050 0.0566265998 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
18 Hb_001170_020 0.0566427382 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000414_040 0.0575650134 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
20 Hb_005888_020 0.0594932331 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]

Gene co-expression network

sample Hb_000210_020 Hb_000210_020 Hb_003836_040 Hb_003836_040 Hb_000210_020--Hb_003836_040 Hb_003605_170 Hb_003605_170 Hb_000210_020--Hb_003605_170 Hb_002284_290 Hb_002284_290 Hb_000210_020--Hb_002284_290 Hb_005797_020 Hb_005797_020 Hb_000210_020--Hb_005797_020 Hb_000053_010 Hb_000053_010 Hb_000210_020--Hb_000053_010 Hb_004464_040 Hb_004464_040 Hb_000210_020--Hb_004464_040 Hb_003836_040--Hb_003605_170 Hb_003836_040--Hb_002284_290 Hb_000174_120 Hb_000174_120 Hb_003836_040--Hb_000174_120 Hb_003836_040--Hb_005797_020 Hb_000834_160 Hb_000834_160 Hb_003836_040--Hb_000834_160 Hb_003605_170--Hb_002284_290 Hb_003605_170--Hb_005797_020 Hb_003605_170--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_003605_170--Hb_000977_250 Hb_003598_070 Hb_003598_070 Hb_002284_290--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_002284_290--Hb_009692_050 Hb_002284_290--Hb_000834_160 Hb_147976_010 Hb_147976_010 Hb_002284_290--Hb_147976_010 Hb_000414_040 Hb_000414_040 Hb_005797_020--Hb_000414_040 Hb_011433_010 Hb_011433_010 Hb_005797_020--Hb_011433_010 Hb_005797_020--Hb_000174_120 Hb_014361_160 Hb_014361_160 Hb_005797_020--Hb_014361_160 Hb_005797_020--Hb_009692_050 Hb_002434_040 Hb_002434_040 Hb_000053_010--Hb_002434_040 Hb_023313_050 Hb_023313_050 Hb_000053_010--Hb_023313_050 Hb_000053_010--Hb_014361_160 Hb_000053_010--Hb_000977_250 Hb_171810_030 Hb_171810_030 Hb_000053_010--Hb_171810_030 Hb_000053_010--Hb_011433_010 Hb_004464_040--Hb_000834_160 Hb_004464_040--Hb_003598_070 Hb_002965_170 Hb_002965_170 Hb_004464_040--Hb_002965_170 Hb_004464_040--Hb_002284_290 Hb_000297_190 Hb_000297_190 Hb_004464_040--Hb_000297_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.77135 1.88396 0 0.0366905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.9464

CAGE analysis