Hb_000210_120

Information

Type -
Description -
Location Contig210: 173831-190305
Sequence    

Annotation

kegg
ID rcu:RCOM_0308900
description hypothetical protein
nr
ID XP_012074341.1
description PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
swissprot
ID Q2KHT3
description Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=2 SV=2
trembl
ID A0A067KIS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08775 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21737: 176056-177068 , PASA_asmbl_21738: 177378-177540 , PASA_asmbl_21739: 178380-178782 , PASA_asmbl_21740: 183003-183310 , PASA_asmbl_21741: 185023-185538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_120 0.0 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
2 Hb_005914_170 0.0545333881 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
3 Hb_000103_270 0.0715565696 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
4 Hb_003098_020 0.0796637235 - - 40S ribosomal protein S5B [Hevea brasiliensis]
5 Hb_007928_030 0.0804569146 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
6 Hb_011344_120 0.0821973542 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
7 Hb_000136_350 0.0872493709 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
8 Hb_104265_040 0.0886828195 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008173_110 0.0905898382 - - DNA binding protein, putative [Ricinus communis]
10 Hb_004734_040 0.0907551029 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
11 Hb_001301_110 0.0919966085 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
12 Hb_186982_040 0.0924763881 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
13 Hb_000665_050 0.0929498268 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
14 Hb_000504_070 0.0935724906 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
15 Hb_001545_170 0.0938260234 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
16 Hb_003633_050 0.094167509 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_001215_040 0.0947894489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000948_160 0.0948666334 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
19 Hb_003994_260 0.0955580487 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_000312_080 0.0955732759 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]

Gene co-expression network

sample Hb_000210_120 Hb_000210_120 Hb_005914_170 Hb_005914_170 Hb_000210_120--Hb_005914_170 Hb_000103_270 Hb_000103_270 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_000103_270--Hb_003098_020 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_003098_020--Hb_000136_350 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_003098_020--Hb_005914_170 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_007928_030--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_000136_350--Hb_186982_040 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33276 3.53475 2.67058 5.44387 2.2508 3.51091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40511 8.35569 4.31039 7.99316 3.66881

CAGE analysis