Hb_000210_130

Information

Type -
Description -
Location Contig210: 196554-199973
Sequence    

Annotation

kegg
ID vvi:100254493
description chaperone protein ClpB4, mitochondrial
nr
ID XP_010654149.1
description PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
swissprot
ID P42730
description Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
trembl
ID A0A061ETP2
description Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein OS=Theobroma cacao GN=TCM_022872 PE=4 SV=1
Gene Ontology
ID GO:0016787
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21742: 196178-199193
cDNA
(Sanger)
(ID:Location)		 006_B24r.ab1: 196178-196927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_130 0.0 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
2 Hb_007111_040 0.1114435724 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
3 Hb_001628_110 0.11876588 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
4 Hb_005410_010 0.1199165762 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
5 Hb_154381_050 0.1207047311 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002172_030 0.1211011545 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
7 Hb_001623_580 0.126020975 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
8 Hb_043959_010 0.1275998316 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
9 Hb_001115_050 0.1279555826 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_002078_040 0.1305331732 - - protein with unknown function [Ricinus communis]
11 Hb_012654_020 0.1305734119 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001504_170 0.1319951454 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
13 Hb_002955_030 0.1377206906 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001846_080 0.1384352764 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
15 Hb_004669_040 0.1426850767 - - ATPase inhibitor, putative [Ricinus communis]
16 Hb_011021_030 0.1444955136 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_000988_050 0.1447249215 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011644_020 0.1459825438 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
19 Hb_019871_020 0.1465182695 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
20 Hb_000050_120 0.146553789 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]

Gene co-expression network

sample Hb_000210_130 Hb_000210_130 Hb_007111_040 Hb_007111_040 Hb_000210_130--Hb_007111_040 Hb_001628_110 Hb_001628_110 Hb_000210_130--Hb_001628_110 Hb_005410_010 Hb_005410_010 Hb_000210_130--Hb_005410_010 Hb_154381_050 Hb_154381_050 Hb_000210_130--Hb_154381_050 Hb_002172_030 Hb_002172_030 Hb_000210_130--Hb_002172_030 Hb_001623_580 Hb_001623_580 Hb_000210_130--Hb_001623_580 Hb_011644_020 Hb_011644_020 Hb_007111_040--Hb_011644_020 Hb_019871_020 Hb_019871_020 Hb_007111_040--Hb_019871_020 Hb_000392_280 Hb_000392_280 Hb_007111_040--Hb_000392_280 Hb_000300_540 Hb_000300_540 Hb_007111_040--Hb_000300_540 Hb_006029_010 Hb_006029_010 Hb_007111_040--Hb_006029_010 Hb_000684_180 Hb_000684_180 Hb_007111_040--Hb_000684_180 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_001628_110--Hb_002172_030 Hb_001628_110--Hb_154381_050 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020 Hb_012654_020 Hb_012654_020 Hb_005410_010--Hb_012654_020 Hb_005410_010--Hb_002172_030 Hb_005410_010--Hb_154381_050 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_001846_080 Hb_001846_080 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_002172_030 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020 Hb_002172_030--Hb_012654_020 Hb_002172_030--Hb_001846_080 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_003605_070 Hb_003605_070 Hb_001623_580--Hb_003605_070 Hb_004032_050 Hb_004032_050 Hb_001623_580--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_001623_580--Hb_002276_190 Hb_005288_160 Hb_005288_160 Hb_001623_580--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_001623_580--Hb_000209_090 Hb_000284_200 Hb_000284_200 Hb_001623_580--Hb_000284_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8603 1.60041 1.74049 2.90946 40.0004 31.8045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1807 10.2019 7.2715 1.33447 3.41716

CAGE analysis