Hb_000210_160

Information

Type -
Description -
Location Contig210: 218545-219096
Sequence    

Annotation

kegg
ID rcu:RCOM_0437510
description hypothetical protein
nr
ID XP_012074337.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21747: 218224-219169
cDNA
(Sanger)
(ID:Location)		 010_A12.ab1: 218445-219169 , 018_G18.ab1: 218684-219175 , 024_C24.ab1: 218443-219169 , 028_N11.ab1: 218359-218610 , 032_F24.ab1: 218478-219181 , 040_O13.ab1: 218458-219169

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_160 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_000563_630 0.088048554 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
3 Hb_001675_310 0.0962476441 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
4 Hb_003849_200 0.0968866391 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
5 Hb_003435_040 0.1264252406 - - tonoplast intrinsic protein [Hevea brasiliensis]
6 Hb_034507_090 0.1286488898 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_000152_170 0.1315208035 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
8 Hb_004324_100 0.1316348645 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_012272_010 0.1318966661 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_003633_150 0.1323069479 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
11 Hb_008725_020 0.1349980754 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
12 Hb_016564_060 0.1371317274 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
13 Hb_004297_080 0.1374831075 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_006736_040 0.1393744964 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
15 Hb_002235_370 0.1397394003 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
16 Hb_182970_010 0.1412623945 - - calmodulin-binding protein 60-D [Populus trichocarpa]
17 Hb_005408_080 0.1433019041 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
18 Hb_000391_060 0.1445531075 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
19 Hb_000589_330 0.1446188328 - - kinase, putative [Ricinus communis]
20 Hb_001048_070 0.1457131602 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000210_160 Hb_000210_160 Hb_000563_630 Hb_000563_630 Hb_000210_160--Hb_000563_630 Hb_001675_310 Hb_001675_310 Hb_000210_160--Hb_001675_310 Hb_003849_200 Hb_003849_200 Hb_000210_160--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_000210_160--Hb_003435_040 Hb_034507_090 Hb_034507_090 Hb_000210_160--Hb_034507_090 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_000563_630--Hb_034507_090 Hb_000742_130 Hb_000742_130 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_000563_630--Hb_003849_200 Hb_001675_310--Hb_003849_200 Hb_001675_310--Hb_000563_630 Hb_002233_080 Hb_002233_080 Hb_001675_310--Hb_002233_080 Hb_000666_120 Hb_000666_120 Hb_001675_310--Hb_000666_120 Hb_001675_310--Hb_003435_040 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_001048_070 Hb_001048_070 Hb_003849_200--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_003849_200--Hb_008725_020 Hb_003849_200--Hb_003435_040 Hb_004634_030 Hb_004634_030 Hb_003849_200--Hb_004634_030 Hb_006736_040 Hb_006736_040 Hb_003435_040--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_003435_040--Hb_024650_010 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_001518_030 Hb_001518_030 Hb_003435_040--Hb_001518_030 Hb_001493_140 Hb_001493_140 Hb_034507_090--Hb_001493_140 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_000645_160 Hb_000645_160 Hb_034507_090--Hb_000645_160 Hb_138086_010 Hb_138086_010 Hb_000152_170--Hb_138086_010 Hb_000365_180 Hb_000365_180 Hb_000152_170--Hb_000365_180 Hb_000152_170--Hb_000563_630 Hb_000163_180 Hb_000163_180 Hb_000152_170--Hb_000163_180 Hb_028841_010 Hb_028841_010 Hb_000152_170--Hb_028841_010 Hb_008406_070 Hb_008406_070 Hb_000152_170--Hb_008406_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9168 1149.57 770.985 1526.04 11.3184 11.7406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0482 36.9239 24.0919 334.887 373.472

CAGE analysis