Hb_000210_180

Information

Type -
Description -
Location Contig210: 231411-231962
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010944mg
description hypothetical protein
nr
ID XP_012074336.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21748: 231007-231692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_180 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_000041_270 0.0546584199 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
3 Hb_096563_010 0.0582518428 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
4 Hb_018838_030 0.0653032009 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000656_400 0.0687021398 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
6 Hb_006332_020 0.0690226379 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_001242_060 0.0702618914 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
8 Hb_001258_090 0.0707987462 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_000059_330 0.0762257095 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
10 Hb_001226_160 0.0763505167 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
11 Hb_000120_730 0.0765937721 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
12 Hb_001259_090 0.077558234 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
13 Hb_003126_050 0.0777320687 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
14 Hb_003092_040 0.0778489467 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
15 Hb_002043_190 0.0790578817 - - rwd domain-containing protein, putative [Ricinus communis]
16 Hb_118707_030 0.0793930048 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
17 Hb_003010_030 0.0798744249 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_001301_160 0.0801256721 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_036790_100 0.0804052996 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
20 Hb_035398_020 0.080955826 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_000210_180 Hb_000210_180 Hb_000041_270 Hb_000041_270 Hb_000210_180--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_000210_180--Hb_096563_010 Hb_018838_030 Hb_018838_030 Hb_000210_180--Hb_018838_030 Hb_000656_400 Hb_000656_400 Hb_000210_180--Hb_000656_400 Hb_006332_020 Hb_006332_020 Hb_000210_180--Hb_006332_020 Hb_001242_060 Hb_001242_060 Hb_000210_180--Hb_001242_060 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00081 3.18043 2.67167 2.66272 4.13831 6.40414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2721 7.38478 4.66294 3.86208 2.57685

CAGE analysis