Hb_000210_240

Information

Type -
Description -
Location Contig210: 265636-267847
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07150g
description POPTRDRAFT_256309; hypothetical protein
nr
ID XP_012074329.1
description PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
swissprot
ID A7UL74
description Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana GN=CTF7 PE=1 SV=1
trembl
ID A0A067KIR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08765 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromosome transmission fidelity 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21757: 267472-267933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_240 0.0 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
2 Hb_002200_040 0.1273203413 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
3 Hb_000136_100 0.1425519041 - - PREDICTED: syntaxin-61 [Jatropha curcas]
4 Hb_086085_020 0.144795668 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
5 Hb_000802_140 0.1587962347 - - hypothetical protein B456_011G045700 [Gossypium raimondii]
6 Hb_180343_010 0.1600977941 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
7 Hb_138475_010 0.1611956505 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
8 Hb_010368_050 0.1619555365 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
9 Hb_066842_010 0.1629078391 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
10 Hb_000975_190 0.163095252 - - histone H4 [Zea mays]
11 Hb_004176_070 0.1636083426 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
12 Hb_010997_090 0.1637437291 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
13 Hb_008970_030 0.1641209193 - - arf gtpase-activating protein, putative [Ricinus communis]
14 Hb_013394_050 0.165235094 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
15 Hb_166574_010 0.1660807982 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
16 Hb_004055_120 0.1664808186 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
17 Hb_129672_010 0.1669879957 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_004032_030 0.1671956659 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
19 Hb_000417_100 0.1677744347 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
20 Hb_000125_010 0.1679833867 transcription factor TF Family: mTERF -

Gene co-expression network

sample Hb_000210_240 Hb_000210_240 Hb_002200_040 Hb_002200_040 Hb_000210_240--Hb_002200_040 Hb_000136_100 Hb_000136_100 Hb_000210_240--Hb_000136_100 Hb_086085_020 Hb_086085_020 Hb_000210_240--Hb_086085_020 Hb_000802_140 Hb_000802_140 Hb_000210_240--Hb_000802_140 Hb_180343_010 Hb_180343_010 Hb_000210_240--Hb_180343_010 Hb_138475_010 Hb_138475_010 Hb_000210_240--Hb_138475_010 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_066842_010 Hb_066842_010 Hb_000136_100--Hb_066842_010 Hb_007894_010 Hb_007894_010 Hb_000136_100--Hb_007894_010 Hb_000060_050 Hb_000060_050 Hb_000136_100--Hb_000060_050 Hb_000258_240 Hb_000258_240 Hb_000136_100--Hb_000258_240 Hb_062537_010 Hb_062537_010 Hb_000136_100--Hb_062537_010 Hb_002150_040 Hb_002150_040 Hb_000136_100--Hb_002150_040 Hb_000310_090 Hb_000310_090 Hb_086085_020--Hb_000310_090 Hb_003929_270 Hb_003929_270 Hb_086085_020--Hb_003929_270 Hb_000141_080 Hb_000141_080 Hb_086085_020--Hb_000141_080 Hb_008970_030 Hb_008970_030 Hb_086085_020--Hb_008970_030 Hb_002289_080 Hb_002289_080 Hb_086085_020--Hb_002289_080 Hb_000768_210 Hb_000768_210 Hb_086085_020--Hb_000768_210 Hb_000122_070 Hb_000122_070 Hb_000802_140--Hb_000122_070 Hb_001828_040 Hb_001828_040 Hb_000802_140--Hb_001828_040 Hb_000907_180 Hb_000907_180 Hb_000802_140--Hb_000907_180 Hb_012573_050 Hb_012573_050 Hb_000802_140--Hb_012573_050 Hb_000103_530 Hb_000103_530 Hb_000802_140--Hb_000103_530 Hb_004631_090 Hb_004631_090 Hb_000802_140--Hb_004631_090 Hb_008147_090 Hb_008147_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_002184_090 Hb_002184_090 Hb_180343_010--Hb_002184_090 Hb_007558_100 Hb_007558_100 Hb_138475_010--Hb_007558_100 Hb_138475_010--Hb_008970_030 Hb_002414_060 Hb_002414_060 Hb_138475_010--Hb_002414_060 Hb_000917_130 Hb_000917_130 Hb_138475_010--Hb_000917_130 Hb_138475_010--Hb_062537_010 Hb_000787_160 Hb_000787_160 Hb_138475_010--Hb_000787_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.719256 1.06188 2.65611 5.67275 0.368742 4.23351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54191 2.0865 2.72143 2.00441 2.24502

CAGE analysis