Hb_000211_040

Information

Type -
Description -
Location Contig211: 66131-69088
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02150g
description POPTRDRAFT_819715; hypothetical protein
nr
ID XP_012066178.1
description PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L337
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23759 PE=4 SV=1
Gene Ontology
ID GO:0005634
description signal transducer and transcription activator isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21833: 66474-68284 , PASA_asmbl_21834: 67005-67314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_040 0.0 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
2 Hb_015292_040 0.0899404046 - - PREDICTED: myb-like protein X [Jatropha curcas]
3 Hb_006555_040 0.0984594977 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
4 Hb_000123_140 0.1047438721 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
5 Hb_000140_440 0.1182791789 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
6 Hb_004994_080 0.1192687137 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_007263_010 0.121577428 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_143766_020 0.1233984785 - - putative phospholipase A2 [Gossypium arboreum]
9 Hb_006618_070 0.1236911744 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
10 Hb_001839_020 0.1251151759 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_001301_330 0.12633343 - - OTU-like cysteine protease family protein [Populus trichocarpa]
12 Hb_001322_020 0.1273583125 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
13 Hb_001930_030 0.1300716673 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
14 Hb_155025_010 0.1304341179 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_001623_490 0.1305992872 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
16 Hb_006816_190 0.1322200094 - - calreticulin family protein [Populus trichocarpa]
17 Hb_002255_040 0.1335376398 - - PREDICTED: biotin synthase [Jatropha curcas]
18 Hb_000663_020 0.1346930604 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
19 Hb_030131_020 0.1349306806 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
20 Hb_000424_070 0.1358769689 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000211_040 Hb_000211_040 Hb_015292_040 Hb_015292_040 Hb_000211_040--Hb_015292_040 Hb_006555_040 Hb_006555_040 Hb_000211_040--Hb_006555_040 Hb_000123_140 Hb_000123_140 Hb_000211_040--Hb_000123_140 Hb_000140_440 Hb_000140_440 Hb_000211_040--Hb_000140_440 Hb_004994_080 Hb_004994_080 Hb_000211_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_000211_040--Hb_007263_010 Hb_015292_040--Hb_004994_080 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_000663_020 Hb_000663_020 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_006555_040--Hb_000140_440 Hb_006555_040--Hb_001930_030 Hb_006555_040--Hb_004994_080 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_000959_190 Hb_000959_190 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000120_350 Hb_000120_350 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_000140_440--Hb_004994_080 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_004994_080--Hb_007263_010 Hb_004994_080--Hb_000364_100 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_007263_010--Hb_007451_040 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_011386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9901 10.6226 46.607 14.9377 16.095 7.43788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07667 6.10191 2.1657 5.66296 15.7259

CAGE analysis