Hb_000211_070

Information

Type -
Description -
Location Contig211: 103022-103674
Sequence    

Annotation

kegg
ID rcu:RCOM_0574620
description isoleucyl tRNA synthetase, putative (EC:6.1.1.5)
nr
ID XP_002529754.1
description isoleucyl tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q73JB2
description Isoleucine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=ileS PE=3 SV=1
trembl
ID B9SUT5
description Isoleucyl tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0574620 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21837: 103389-140338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_070 0.0 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
2 Hb_000890_220 0.1171792526 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
3 Hb_006901_040 0.1320023804 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000213_060 0.1354225293 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
5 Hb_000779_040 0.1381877065 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
6 Hb_000787_100 0.1384625795 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
7 Hb_004206_040 0.1389832695 - - cytochrome P450, putative [Ricinus communis]
8 Hb_172256_010 0.139112987 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000792_110 0.1417420854 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
10 Hb_025048_040 0.1421000998 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
11 Hb_000211_090 0.1421950182 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
12 Hb_000211_080 0.1436326686 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_000212_280 0.1455074294 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
14 Hb_002918_070 0.145959113 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
15 Hb_000185_090 0.1472176835 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
16 Hb_005028_010 0.1491200181 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
17 Hb_013753_010 0.1518175643 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
18 Hb_174865_050 0.1527848815 - - PREDICTED: neuroguidin [Jatropha curcas]
19 Hb_000016_180 0.1540223507 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_012760_200 0.1554560621 - - protein phsophatase-2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000211_070 Hb_000211_070 Hb_000890_220 Hb_000890_220 Hb_000211_070--Hb_000890_220 Hb_006901_040 Hb_006901_040 Hb_000211_070--Hb_006901_040 Hb_000213_060 Hb_000213_060 Hb_000211_070--Hb_000213_060 Hb_000779_040 Hb_000779_040 Hb_000211_070--Hb_000779_040 Hb_000787_100 Hb_000787_100 Hb_000211_070--Hb_000787_100 Hb_004206_040 Hb_004206_040 Hb_000211_070--Hb_004206_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_012760_200 Hb_012760_200 Hb_000890_220--Hb_012760_200 Hb_000212_280 Hb_000212_280 Hb_006901_040--Hb_000212_280 Hb_113216_010 Hb_113216_010 Hb_006901_040--Hb_113216_010 Hb_002675_190 Hb_002675_190 Hb_006901_040--Hb_002675_190 Hb_000016_180 Hb_000016_180 Hb_006901_040--Hb_000016_180 Hb_006901_040--Hb_000213_060 Hb_174865_050 Hb_174865_050 Hb_006901_040--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_000213_060--Hb_113216_010 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_000787_100--Hb_000890_220 Hb_000787_100--Hb_013753_010 Hb_002374_150 Hb_002374_150 Hb_000787_100--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000787_100--Hb_000331_480 Hb_002078_420 Hb_002078_420 Hb_000787_100--Hb_002078_420 Hb_000787_100--Hb_012760_200 Hb_004206_040--Hb_000779_040 Hb_004206_040--Hb_000792_110 Hb_004206_040--Hb_000890_220 Hb_004206_040--Hb_000016_180 Hb_035360_010 Hb_035360_010 Hb_004206_040--Hb_035360_010 Hb_025048_040 Hb_025048_040 Hb_004206_040--Hb_025048_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8325 9.21948 1.27769 0 30.457 46.2729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5573 2.55153 3.79201 10.1491 2.78364

CAGE analysis