Hb_000211_090

Information

Type -
Description -
Location Contig211: 134710-139885
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G023400g
description hypothetical protein
nr
ID XP_007131559.1
description hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7AFD0
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_011G023400g PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21837: 103389-140338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_090 0.0 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
2 Hb_000779_040 0.0548801064 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_000792_110 0.0633446556 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
4 Hb_002918_070 0.0687910157 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
5 Hb_000890_220 0.069409207 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
6 Hb_003666_050 0.07904373 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
7 Hb_003673_020 0.0802493912 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
8 Hb_004531_090 0.0816135744 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
9 Hb_010189_010 0.0836614508 - - -
10 Hb_000185_090 0.0837281184 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
11 Hb_000608_340 0.0876678377 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
12 Hb_012760_200 0.0908682052 - - protein phsophatase-2a, putative [Ricinus communis]
13 Hb_035360_010 0.092646779 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
14 Hb_113216_010 0.0946850903 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
15 Hb_174865_050 0.0953992496 - - PREDICTED: neuroguidin [Jatropha curcas]
16 Hb_000212_280 0.096791081 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
17 Hb_005028_010 0.0974011778 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
18 Hb_002837_070 0.0979682843 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
19 Hb_000016_180 0.099484302 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
20 Hb_025048_040 0.0995478505 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000211_090 Hb_000211_090 Hb_000779_040 Hb_000779_040 Hb_000211_090--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000890_220 Hb_000890_220 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_000779_040--Hb_000890_220 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_005000_270 Hb_005000_270 Hb_002918_070--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_001195_030 Hb_001195_030 Hb_003666_050--Hb_001195_030 Hb_003666_050--Hb_000608_340 Hb_000181_310 Hb_000181_310 Hb_003666_050--Hb_000181_310 Hb_000185_090 Hb_000185_090 Hb_003666_050--Hb_000185_090 Hb_174865_050 Hb_174865_050 Hb_003666_050--Hb_174865_050 Hb_003673_020--Hb_035360_010 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003673_020--Hb_003666_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
194.835 47.7949 14.752 21.0329 200.08 220.049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.8609 17.9826 24.1911 28.5754 16.8147

CAGE analysis