Hb_000212_130

Information

Type -
Description -
Location Contig212: 180212-187061
Sequence    

Annotation

kegg
ID rcu:RCOM_1077390
description hypothetical protein
nr
ID XP_002514798.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C5H9
description Gamma-tubulin complex component 2 OS=Arabidopsis thaliana GN=GCP2 PE=1 SV=1
trembl
ID B9RM29
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077390 PE=4 SV=1
Gene Ontology
ID GO:0000922
description ycf20-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000792_110 0.1214087221 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
3 Hb_000619_070 0.1243786338 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
4 Hb_101151_020 0.127996692 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000608_340 0.1285375988 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
6 Hb_003299_080 0.1294756551 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
7 Hb_035360_010 0.1342142656 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
8 Hb_006631_010 0.1344031877 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
9 Hb_000779_040 0.1373580955 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
10 Hb_000890_220 0.1375124744 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_001534_070 0.1381023254 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
12 Hb_000544_120 0.1382058818 - - PREDICTED: thymidylate kinase [Jatropha curcas]
13 Hb_001907_060 0.1388847565 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
14 Hb_000016_280 0.1416346331 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
15 Hb_006275_050 0.1416461869 - - CP3 [Hevea brasiliensis]
16 Hb_004206_040 0.1424745729 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000018_160 0.1426396055 - - nitrate transporter, putative [Ricinus communis]
18 Hb_013753_010 0.1446163746 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
19 Hb_012760_200 0.1469356285 - - protein phsophatase-2a, putative [Ricinus communis]
20 Hb_001247_140 0.1490401923 - - -

Gene co-expression network

sample Hb_000212_130 Hb_000212_130 Hb_000792_110 Hb_000792_110 Hb_000212_130--Hb_000792_110 Hb_000619_070 Hb_000619_070 Hb_000212_130--Hb_000619_070 Hb_101151_020 Hb_101151_020 Hb_000212_130--Hb_101151_020 Hb_000608_340 Hb_000608_340 Hb_000212_130--Hb_000608_340 Hb_003299_080 Hb_003299_080 Hb_000212_130--Hb_003299_080 Hb_035360_010 Hb_035360_010 Hb_000212_130--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000792_110--Hb_000211_090 Hb_000779_040 Hb_000779_040 Hb_000792_110--Hb_000779_040 Hb_000890_220 Hb_000890_220 Hb_000792_110--Hb_000890_220 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000619_070--Hb_035360_010 Hb_000619_070--Hb_000608_340 Hb_000619_070--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_000619_070--Hb_003673_020 Hb_045502_010 Hb_045502_010 Hb_000619_070--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000619_070--Hb_019871_020 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_101151_020--Hb_000890_220 Hb_013753_010 Hb_013753_010 Hb_101151_020--Hb_013753_010 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_101151_020--Hb_012760_200 Hb_000608_340--Hb_000779_040 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000608_340--Hb_035360_010 Hb_001247_140 Hb_001247_140 Hb_003299_080--Hb_001247_140 Hb_003299_080--Hb_013753_010 Hb_031089_030 Hb_031089_030 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_035360_010--Hb_003673_020 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000211_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9711 12.5428 2.00756 0.816895 30.5998 23.0388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08953 1.15973 3.14818 2.56 0.952842

CAGE analysis