Hb_000212_170

Information

Type -
Description -
Location Contig212: 197975-199241
Sequence    

Annotation

kegg
ID pxb:103935275
description GDSL esterase/lipase At2g30220-like
nr
ID XP_012080288.1
description PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
swissprot
ID O22927
description GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1
trembl
ID A0A067LEI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17250 PE=4 SV=1
Gene Ontology
ID GO:0016635
description gdsl esterase lipase at2g30310-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21942: 198025-199075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_170 0.0 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
2 Hb_162008_040 0.0285297858 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
3 Hb_002030_140 0.0450724485 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
4 Hb_022929_010 0.045151598 - - zinc/iron transporter, putative [Ricinus communis]
5 Hb_000680_080 0.0451890019 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
6 Hb_001546_100 0.0452455689 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
7 Hb_012573_060 0.0456762919 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
8 Hb_121680_010 0.051818915 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
9 Hb_014109_030 0.0578264942 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
10 Hb_008252_010 0.0580538233 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
11 Hb_004019_130 0.0590585936 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
12 Hb_000077_430 0.0595485334 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
13 Hb_000844_120 0.0595565553 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
14 Hb_003994_210 0.0599383247 - - zinc finger protein, putative [Ricinus communis]
15 Hb_004447_040 0.0609251134 - - cyclin d, putative [Ricinus communis]
16 Hb_000129_060 0.0628974068 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
17 Hb_000592_120 0.0629843775 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
18 Hb_005854_060 0.064260253 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_013849_010 0.0672518518 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
20 Hb_000500_380 0.0683882629 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]

Gene co-expression network

sample Hb_000212_170 Hb_000212_170 Hb_162008_040 Hb_162008_040 Hb_000212_170--Hb_162008_040 Hb_002030_140 Hb_002030_140 Hb_000212_170--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000212_170--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000212_170--Hb_000680_080 Hb_001546_100 Hb_001546_100 Hb_000212_170--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000212_170--Hb_012573_060 Hb_121680_010 Hb_121680_010 Hb_162008_040--Hb_121680_010 Hb_008252_010 Hb_008252_010 Hb_162008_040--Hb_008252_010 Hb_005854_060 Hb_005854_060 Hb_162008_040--Hb_005854_060 Hb_162008_020 Hb_162008_020 Hb_162008_040--Hb_162008_020 Hb_162008_040--Hb_001546_100 Hb_002030_140--Hb_022929_010 Hb_002030_140--Hb_000680_080 Hb_002030_140--Hb_012573_060 Hb_002030_140--Hb_001546_100 Hb_014109_030 Hb_014109_030 Hb_002030_140--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_002030_140--Hb_000844_120 Hb_022929_010--Hb_000680_080 Hb_022929_010--Hb_012573_060 Hb_022929_010--Hb_001546_100 Hb_022929_010--Hb_014109_030 Hb_022929_010--Hb_000844_120 Hb_000680_080--Hb_012573_060 Hb_000680_080--Hb_001546_100 Hb_000680_080--Hb_014109_030 Hb_000680_080--Hb_000844_120 Hb_001546_100--Hb_012573_060 Hb_004019_130 Hb_004019_130 Hb_001546_100--Hb_004019_130 Hb_000077_430 Hb_000077_430 Hb_001546_100--Hb_000077_430 Hb_012573_060--Hb_014109_030 Hb_012573_060--Hb_000844_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 33.7482 2.21958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0692789 0 0.0770208

CAGE analysis