Hb_000212_190

Information

Type -
Description -
Location Contig212: 226764-233950
Sequence    

Annotation

kegg
ID rcu:RCOM_1077540
description phosphatidylcholine-sterol O-acyltransferase, putative
nr
ID XP_012085803.1
description PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
swissprot
ID Q93V61
description Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana GN=LCAT3 PE=1 SV=1
trembl
ID B9RM34
description Phosphatidylcholine-sterol O-acyltransferase, putative OS=Ricinus communis GN=RCOM_1077540 PE=4 SV=1
Gene Ontology
ID GO:0008374
description phospholipase a lcat3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_190 0.0 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
2 Hb_137222_020 0.1013171581 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
3 Hb_004097_130 0.1133560329 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
4 Hb_001472_060 0.1189387342 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
5 Hb_012539_060 0.123300549 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
6 Hb_000039_150 0.1275546455 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_002055_040 0.1294719916 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
8 Hb_001205_120 0.1331634357 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
9 Hb_000212_310 0.1333647685 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
10 Hb_002478_030 0.1338695002 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
11 Hb_000094_070 0.1353498765 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
12 Hb_000635_090 0.1361435639 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_000679_270 0.1378051348 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_001518_080 0.1378084295 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
15 Hb_011228_010 0.1380942338 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000661_110 0.1386864903 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
17 Hb_000050_190 0.1387695877 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002769_030 0.1391515322 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
19 Hb_021409_180 0.1394167374 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
20 Hb_000103_480 0.1401940141 - - -

Gene co-expression network

sample Hb_000212_190 Hb_000212_190 Hb_137222_020 Hb_137222_020 Hb_000212_190--Hb_137222_020 Hb_004097_130 Hb_004097_130 Hb_000212_190--Hb_004097_130 Hb_001472_060 Hb_001472_060 Hb_000212_190--Hb_001472_060 Hb_012539_060 Hb_012539_060 Hb_000212_190--Hb_012539_060 Hb_000039_150 Hb_000039_150 Hb_000212_190--Hb_000039_150 Hb_002055_040 Hb_002055_040 Hb_000212_190--Hb_002055_040 Hb_000103_480 Hb_000103_480 Hb_137222_020--Hb_000103_480 Hb_000200_030 Hb_000200_030 Hb_137222_020--Hb_000200_030 Hb_004398_030 Hb_004398_030 Hb_137222_020--Hb_004398_030 Hb_021409_180 Hb_021409_180 Hb_137222_020--Hb_021409_180 Hb_000103_530 Hb_000103_530 Hb_137222_020--Hb_000103_530 Hb_004097_130--Hb_001472_060 Hb_003531_080 Hb_003531_080 Hb_004097_130--Hb_003531_080 Hb_154471_020 Hb_154471_020 Hb_004097_130--Hb_154471_020 Hb_004097_130--Hb_000103_480 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040 Hb_001472_060--Hb_003531_080 Hb_001472_060--Hb_021409_180 Hb_000808_050 Hb_000808_050 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_012632_010 Hb_012632_010 Hb_012539_060--Hb_012632_010 Hb_012539_060--Hb_000039_150 Hb_001377_350 Hb_001377_350 Hb_012539_060--Hb_001377_350 Hb_006501_090 Hb_006501_090 Hb_012539_060--Hb_006501_090 Hb_000537_050 Hb_000537_050 Hb_012539_060--Hb_000537_050 Hb_020378_030 Hb_020378_030 Hb_012539_060--Hb_020378_030 Hb_008959_010 Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_011228_010 Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_002055_040--Hb_011228_010 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85319 4.36816 7.70028 6.58403 3.17498 7.28853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38001 1.52832 10.656 6.69877 9.43076

CAGE analysis