Hb_000212_230

Information

Type -
Description -
Location Contig212: 248229-270650
Sequence    

Annotation

kegg
ID rcu:RCOM_1077610
description ATP binding protein, putative (EC:3.1.26.3)
nr
ID XP_012085800.1
description PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
swissprot
ID Q3EBC8
description Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2
trembl
ID B9RM41
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077610 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21948: 249706-251509 , PASA_asmbl_21949: 251659-254709 , PASA_asmbl_21950: 254914-256450 , PASA_asmbl_21951: 256070-256266 , PASA_asmbl_21952: 257996-261850 , PASA_asmbl_21953: 262114-263432 , PASA_asmbl_21955: 265162-270274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_230 0.0 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
2 Hb_003581_200 0.0532836581 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
3 Hb_000016_210 0.0552092905 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
4 Hb_005588_080 0.0692577015 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
5 Hb_006913_020 0.0692652403 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
6 Hb_010863_050 0.0696166655 - - OTU domain-containing protein 6B, putative [Ricinus communis]
7 Hb_000521_250 0.070765783 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
8 Hb_001789_110 0.0715668155 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000023_260 0.0719112218 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
10 Hb_001377_190 0.0720115185 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_000347_430 0.0723217811 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
12 Hb_003153_010 0.0724495644 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
13 Hb_001957_020 0.0726874994 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
14 Hb_002027_080 0.0739446553 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
15 Hb_000139_080 0.0741730567 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
16 Hb_004452_120 0.0744673038 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
17 Hb_021374_030 0.0745916161 - - hypothetical protein RCOM_0351490 [Ricinus communis]
18 Hb_007413_010 0.0750508194 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
19 Hb_000078_140 0.0751715942 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
20 Hb_000193_330 0.0760835591 - - PREDICTED: formin-like protein 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_230 Hb_000212_230 Hb_003581_200 Hb_003581_200 Hb_000212_230--Hb_003581_200 Hb_000016_210 Hb_000016_210 Hb_000212_230--Hb_000016_210 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_010863_050 Hb_010863_050 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_002027_080 Hb_002027_080 Hb_003581_200--Hb_002027_080 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_079526_040 Hb_079526_040 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_000016_210--Hb_003581_200 Hb_000139_080 Hb_000139_080 Hb_000016_210--Hb_000139_080 Hb_001699_220 Hb_001699_220 Hb_000016_210--Hb_001699_220 Hb_002006_150 Hb_002006_150 Hb_000016_210--Hb_002006_150 Hb_001957_020 Hb_001957_020 Hb_000016_210--Hb_001957_020 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_007413_010 Hb_007413_010 Hb_006913_020--Hb_007413_010 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_000708_030 Hb_000708_030 Hb_000521_250--Hb_000708_030 Hb_002414_050 Hb_002414_050 Hb_000521_250--Hb_002414_050 Hb_000138_100 Hb_000138_100 Hb_000521_250--Hb_000138_100 Hb_003680_120 Hb_003680_120 Hb_000521_250--Hb_003680_120 Hb_003883_060 Hb_003883_060 Hb_000521_250--Hb_003883_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54226 4.04547 5.76972 5.6828 3.6295 3.67538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95476 3.59953 4.25112 4.58508 7.78645

CAGE analysis