Hb_000212_260

Information

Type -
Description -
Location Contig212: 287497-294212
Sequence    

Annotation

kegg
ID rcu:RCOM_1077670
description acyl carrier protein, putative
nr
ID ABV08889.1
description acyl-carrier-protein [Triadica sebifera]
swissprot
ID O80800
description Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1
trembl
ID E6Y2N3
description Acyl carrier protein OS=Triadica sebifera GN=acp PE=2 SV=1
Gene Ontology
ID GO:0005759
description acyl carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21960: 287507-294171
cDNA
(Sanger)
(ID:Location)		 009_I17.ab1: 287507-294028 , 030_F15.ab1: 287507-294028 , 041_N01.ab1: 287507-294028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_260 0.0 - - acyl-carrier-protein [Triadica sebifera]
2 Hb_003376_130 0.0706565433 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
3 Hb_000069_100 0.0709131196 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001912_010 0.0726657285 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
5 Hb_000648_060 0.0736451289 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
6 Hb_010172_030 0.074573529 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
7 Hb_009851_100 0.0768349984 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
8 Hb_000567_170 0.0784706534 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
9 Hb_000099_060 0.0786226168 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
10 Hb_001045_080 0.0796747608 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
11 Hb_007021_020 0.0803996634 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
12 Hb_002571_020 0.0810367736 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
13 Hb_005590_020 0.0817411104 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
14 Hb_000329_330 0.0835821542 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_000120_750 0.0841429381 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
16 Hb_001687_040 0.0846145157 - - actin-depolymerizing factor [Hevea brasiliensis]
17 Hb_011609_180 0.0853147499 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
18 Hb_003927_130 0.0856337957 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
19 Hb_017862_010 0.0865649489 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_002097_060 0.0879210413 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000212_260 Hb_000212_260 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_010172_070 Hb_010172_070 Hb_001912_010--Hb_010172_070 Hb_001912_010--Hb_006573_220 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_002918_200 Hb_002918_200 Hb_000648_060--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_000648_060--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_000648_060--Hb_003175_040 Hb_003927_130 Hb_003927_130 Hb_000648_060--Hb_003927_130 Hb_001538_110 Hb_001538_110 Hb_000648_060--Hb_001538_110 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_009851_100--Hb_002571_020 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_001045_080 Hb_001045_080 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
203.367 29.1252 51.2805 81.5493 153.678 179.166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
418.902 530.69 310.545 80.1794 42.7012

CAGE analysis