Hb_000212_290

Information

Type -
Description -
Location Contig212: 312729-313358
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08250g
description tic20 family protein
nr
ID XP_012085786.1
description PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
swissprot
ID O82251
description Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1
trembl
ID A0A067JSM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein tic 20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21966: 312655-313803
cDNA
(Sanger)
(ID:Location)		 002_B16.ab1: 312704-313492 , 014_P04.ab1: 312707-313442 , 023_A12.ab1: 312704-313390 , 031_G06.ab1: 312655-313390 , 032_H16.ab1: 312655-313373 , 042_K05.ab1: 312707-313520 , 043_G10.ab1: 312704-313454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_290 0.0 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
2 Hb_001222_080 0.0864320143 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
3 Hb_007928_030 0.0894225762 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
4 Hb_005307_050 0.0899393081 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_000483_300 0.0938931516 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
6 Hb_001353_010 0.0977562495 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
7 Hb_000431_070 0.0978882791 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
8 Hb_002609_200 0.0979358475 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_000808_190 0.0999892793 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
10 Hb_000207_400 0.1003283078 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
11 Hb_000847_060 0.1042402769 - - hypothetical protein [Jatropha curcas]
12 Hb_000701_100 0.1043437306 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_002995_050 0.1066592027 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_087749_010 0.1078145443 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
15 Hb_000922_040 0.1095739111 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
16 Hb_089032_030 0.1102286627 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_011344_120 0.1105055234 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
18 Hb_000649_140 0.1107379511 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
19 Hb_000053_020 0.1107473773 - - F-box and wd40 domain protein, putative [Ricinus communis]
20 Hb_002193_030 0.1108990395 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]

Gene co-expression network

sample Hb_000212_290 Hb_000212_290 Hb_001222_080 Hb_001222_080 Hb_000212_290--Hb_001222_080 Hb_007928_030 Hb_007928_030 Hb_000212_290--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_000212_290--Hb_005307_050 Hb_000483_300 Hb_000483_300 Hb_000212_290--Hb_000483_300 Hb_001353_010 Hb_001353_010 Hb_000212_290--Hb_001353_010 Hb_000431_070 Hb_000431_070 Hb_000212_290--Hb_000431_070 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_000922_040 Hb_000922_040 Hb_001222_080--Hb_000922_040 Hb_000046_350 Hb_000046_350 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_008232_010 Hb_008232_010 Hb_001222_080--Hb_008232_010 Hb_007894_060 Hb_007894_060 Hb_007928_030--Hb_007894_060 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000538_120 Hb_000538_120 Hb_007928_030--Hb_000538_120 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_007928_030--Hb_005914_170 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_000347_240 Hb_000347_240 Hb_000483_300--Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000483_300--Hb_001189_070 Hb_004157_050 Hb_004157_050 Hb_000483_300--Hb_004157_050 Hb_001366_180 Hb_001366_180 Hb_000483_300--Hb_001366_180 Hb_023371_020 Hb_023371_020 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2548 36.6184 33.2579 77.4901 21.4331 51.3102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.6219 123.288 53.5982 53.8945 75.0409

CAGE analysis