Hb_000212_310

Information

Type -
Description -
Location Contig212: 325725-327947
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04750g
description pentatricopeptide repeat-containing family protein
nr
ID KDP42576.1
description hypothetical protein JCGZ_24350 [Jatropha curcas]
swissprot
ID Q6NQ83
description Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1
trembl
ID A0A067L275
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21967: 325808-326221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_310 0.0 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
2 Hb_006660_010 0.0777336698 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
3 Hb_002169_050 0.0812815888 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
4 Hb_007904_160 0.0842677577 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
5 Hb_002909_140 0.0851521226 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
6 Hb_000212_380 0.0903682501 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_004676_010 0.0918096387 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
8 Hb_003168_110 0.0941173673 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
9 Hb_007803_050 0.0943314572 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
10 Hb_012022_090 0.0969105772 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
11 Hb_000050_190 0.0979671459 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000665_060 0.0984119331 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
13 Hb_000890_210 0.0996368956 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
14 Hb_000083_120 0.0998918336 - - transcription factor, putative [Ricinus communis]
15 Hb_000592_030 0.1000482333 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
16 Hb_000571_110 0.1001381133 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
17 Hb_000703_150 0.1005715601 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
18 Hb_000174_180 0.1011724336 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_009548_020 0.1017029884 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_001314_010 0.101933532 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000212_310 Hb_000212_310 Hb_006660_010 Hb_006660_010 Hb_000212_310--Hb_006660_010 Hb_002169_050 Hb_002169_050 Hb_000212_310--Hb_002169_050 Hb_007904_160 Hb_007904_160 Hb_000212_310--Hb_007904_160 Hb_002909_140 Hb_002909_140 Hb_000212_310--Hb_002909_140 Hb_000212_380 Hb_000212_380 Hb_000212_310--Hb_000212_380 Hb_004676_010 Hb_004676_010 Hb_000212_310--Hb_004676_010 Hb_007803_050 Hb_007803_050 Hb_006660_010--Hb_007803_050 Hb_011310_160 Hb_011310_160 Hb_006660_010--Hb_011310_160 Hb_002811_060 Hb_002811_060 Hb_006660_010--Hb_002811_060 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_000592_030 Hb_000592_030 Hb_006660_010--Hb_000592_030 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_002169_050--Hb_002909_140 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_012498_010 Hb_012498_010 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_010142_020 Hb_010142_020 Hb_002169_050--Hb_010142_020 Hb_000983_150 Hb_000983_150 Hb_007904_160--Hb_000983_150 Hb_000367_010 Hb_000367_010 Hb_007904_160--Hb_000367_010 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_002909_140--Hb_007803_050 Hb_002909_140--Hb_000212_380 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_001936_130 Hb_001936_130 Hb_000212_380--Hb_001936_130 Hb_012322_010 Hb_012322_010 Hb_000212_380--Hb_012322_010 Hb_000212_380--Hb_002169_050 Hb_001004_070 Hb_001004_070 Hb_000212_380--Hb_001004_070 Hb_000212_380--Hb_012498_010 Hb_000579_230 Hb_000579_230 Hb_004676_010--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_004676_010--Hb_012395_140 Hb_000703_150 Hb_000703_150 Hb_004676_010--Hb_000703_150 Hb_009615_170 Hb_009615_170 Hb_004676_010--Hb_009615_170 Hb_000395_070 Hb_000395_070 Hb_004676_010--Hb_000395_070 Hb_001754_040 Hb_001754_040 Hb_004676_010--Hb_001754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.993946 0.639419 0.526559 0.864367 0.564783 1.09133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.522189 0.395085 1.20194 1.03642 0.669924

CAGE analysis