Hb_000212_330

Information

Type -
Description -
Location Contig212: 332279-340292
Sequence    

Annotation

kegg
ID rcu:RCOM_1077760
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) (EC:6.4.1.2)
nr
ID XP_012085781.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q42533
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2
trembl
ID B9RM56
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1) OS=Ricinus communis GN=RCOM_1077760 PE=4 SV=1
Gene Ontology
ID GO:0044434
description biotin carboxyl carrier protein subunit of of het-accase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21971: 332371-334313 , PASA_asmbl_21972: 334644-340196
cDNA
(Sanger)
(ID:Location)		 016_B22.ab1: 332371-334313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_330 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_009545_080 0.0659381507 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
3 Hb_000094_300 0.0660590173 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
4 Hb_008748_040 0.0682363207 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
5 Hb_008511_130 0.0737939456 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
6 Hb_054865_120 0.0760122819 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
7 Hb_000883_020 0.0777021557 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
8 Hb_065500_060 0.0805356738 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
9 Hb_003922_010 0.0808263761 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
10 Hb_003226_140 0.0815123929 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
11 Hb_005357_080 0.0831657909 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
12 Hb_000521_080 0.0839943523 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
13 Hb_002728_070 0.0848782446 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
14 Hb_002303_070 0.0852214215 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
15 Hb_001983_020 0.0862702869 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
16 Hb_002490_020 0.0883877032 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
17 Hb_062135_030 0.0901881026 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
18 Hb_000676_250 0.0904150805 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
19 Hb_001157_020 0.0905495195 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
20 Hb_003939_050 0.0905646404 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000212_330 Hb_000212_330 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000094_300 Hb_000094_300 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_009545_080--Hb_000883_020 Hb_002997_080 Hb_002997_080 Hb_009545_080--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_032986_010 Hb_032986_010 Hb_009545_080--Hb_032986_010 Hb_000094_300--Hb_008511_130 Hb_000094_300--Hb_009545_080 Hb_000053_130 Hb_000053_130 Hb_000094_300--Hb_000053_130 Hb_000521_080 Hb_000521_080 Hb_000094_300--Hb_000521_080 Hb_000141_250 Hb_000141_250 Hb_000094_300--Hb_000141_250 Hb_000025_470 Hb_000025_470 Hb_008748_040--Hb_000025_470 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_011671_040 Hb_011671_040 Hb_008748_040--Hb_011671_040 Hb_008511_130--Hb_000141_250 Hb_008511_130--Hb_002997_080 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_000230_560 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4823 6.95197 14.525 10.6029 13.2893 15.9838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8862 13.4687 14.6024 10.19 11.392

CAGE analysis