Hb_000212_380

Information

Type -
Description -
Location Contig212: 376029-385678
Sequence    

Annotation

kegg
ID rcu:RCOM_1077820
description Aspartic proteinase Asp1 precursor, putative (EC:3.4.23.3)
nr
ID XP_002514831.1
description Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9RM62
description Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_1077820 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21976: 376185-385614 , PASA_asmbl_21977: 376124-385558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_380 0.0 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
2 Hb_002909_140 0.0615439032 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
3 Hb_001936_130 0.0781111969 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
4 Hb_012322_010 0.0783696097 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_002169_050 0.0801190323 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
6 Hb_001004_070 0.0804477549 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012498_010 0.0812303396 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
8 Hb_007803_050 0.0853771143 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
9 Hb_006660_010 0.0889238991 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
10 Hb_000212_310 0.0903682501 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
11 Hb_000159_090 0.0915488349 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
12 Hb_007460_020 0.0923213773 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
13 Hb_005291_050 0.0931644925 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
14 Hb_000156_010 0.0964335651 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
15 Hb_003994_280 0.0966358468 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
16 Hb_000366_200 0.0971454036 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
17 Hb_003994_150 0.0975277104 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
18 Hb_000260_010 0.0982597134 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_000031_110 0.0985369349 - - Coatomer, beta subunit isoform 1 [Theobroma cacao]
20 Hb_003683_020 0.0990538176 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000212_380 Hb_000212_380 Hb_002909_140 Hb_002909_140 Hb_000212_380--Hb_002909_140 Hb_001936_130 Hb_001936_130 Hb_000212_380--Hb_001936_130 Hb_012322_010 Hb_012322_010 Hb_000212_380--Hb_012322_010 Hb_002169_050 Hb_002169_050 Hb_000212_380--Hb_002169_050 Hb_001004_070 Hb_001004_070 Hb_000212_380--Hb_001004_070 Hb_012498_010 Hb_012498_010 Hb_000212_380--Hb_012498_010 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_002909_140--Hb_002169_050 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_000192_080 Hb_000192_080 Hb_012322_010--Hb_000192_080 Hb_187953_010 Hb_187953_010 Hb_012322_010--Hb_187953_010 Hb_007638_030 Hb_007638_030 Hb_012322_010--Hb_007638_030 Hb_000429_150 Hb_000429_150 Hb_012322_010--Hb_000429_150 Hb_000140_280 Hb_000140_280 Hb_012322_010--Hb_000140_280 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_010142_020 Hb_010142_020 Hb_002169_050--Hb_010142_020 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_001004_070--Hb_003025_100 Hb_001004_070--Hb_012498_010 Hb_001004_070--Hb_027380_220 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.419 8.33188 11.9013 24.186 14.822 23.2322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.239 10.1792 24.3672 20.5773 16.2753

CAGE analysis