Hb_000212_410

Information

Type -
Description -
Location Contig212: 403414-429986
Sequence    

Annotation

kegg
ID rcu:RCOM_1077970
description serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_012085773.1
description PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
swissprot
ID P37890
description Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica GN=CBP1 PE=2 SV=1
trembl
ID A0A067JSL7
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_18035 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21978: 405713-406220 , PASA_asmbl_21979: 408614-411964 , PASA_asmbl_21981: 415884-416057 , PASA_asmbl_21982: 416413-416697 , PASA_asmbl_21983: 425300-425633 , PASA_asmbl_21984: 427556-428541 , PASA_asmbl_21985: 428564-429968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_410 0.0 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
2 Hb_000627_050 0.0441091347 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
3 Hb_009788_020 0.0481136541 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
4 Hb_000703_120 0.0497028488 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
5 Hb_007270_020 0.053388437 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
6 Hb_002724_010 0.0700567253 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
7 Hb_060253_010 0.0722405088 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
8 Hb_000977_020 0.0765578571 - - beta-hexosaminidase, putative [Ricinus communis]
9 Hb_005725_240 0.078436382 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
10 Hb_069696_020 0.0934475073 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_001750_020 0.0935209601 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
12 Hb_001098_040 0.0938479754 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
13 Hb_002890_200 0.0939594992 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
14 Hb_005365_010 0.094258603 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
15 Hb_002822_010 0.0942836186 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
16 Hb_000976_400 0.0957489827 - - synaptotagmin, putative [Ricinus communis]
17 Hb_001051_010 0.0960325162 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
18 Hb_000046_120 0.0972098348 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_001488_420 0.098928765 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_000318_010 0.0997811055 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000212_410 Hb_000212_410 Hb_000627_050 Hb_000627_050 Hb_000212_410--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_000212_410--Hb_009788_020 Hb_000703_120 Hb_000703_120 Hb_000212_410--Hb_000703_120 Hb_007270_020 Hb_007270_020 Hb_000212_410--Hb_007270_020 Hb_002724_010 Hb_002724_010 Hb_000212_410--Hb_002724_010 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_000627_050--Hb_000703_120 Hb_000627_050--Hb_009788_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_009788_020--Hb_000703_120 Hb_009788_020--Hb_007270_020 Hb_009788_020--Hb_060253_010 Hb_001488_420 Hb_001488_420 Hb_009788_020--Hb_001488_420 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_000703_120--Hb_002724_010 Hb_000703_120--Hb_007270_020 Hb_007270_020--Hb_060253_010 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_002724_010--Hb_000977_020 Hb_000318_010 Hb_000318_010 Hb_002724_010--Hb_000318_010 Hb_002724_010--Hb_000627_050 Hb_000290_030 Hb_000290_030 Hb_002724_010--Hb_000290_030 Hb_003435_030 Hb_003435_030 Hb_060253_010--Hb_003435_030 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000046_120 Hb_000046_120 Hb_060253_010--Hb_000046_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0471053 1.67744 7.80777 7.15063 0.0153223 0.0345612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0365584 0.00575437 0.0110944 1.43623 9.02747

CAGE analysis