Hb_000212_470

Information

Type -
Description -
Location Contig212: 464980-465293
Sequence    

Annotation

kegg
ID cic:CICLE_v10033256mg
description hypothetical protein
nr
ID XP_006436914.1
description hypothetical protein CICLE_v10033256mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4VCU2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033256mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21996: 464821-466543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_470 0.0 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
2 Hb_008847_020 0.0826496558 - - 40S ribosomal protein S17C [Hevea brasiliensis]
3 Hb_003226_220 0.0923210073 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
4 Hb_000820_130 0.0963644716 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
5 Hb_010883_150 0.1035118544 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
6 Hb_002835_320 0.1048199014 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_000236_460 0.1054224043 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
8 Hb_003607_170 0.1056393058 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
9 Hb_011161_050 0.109078099 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
10 Hb_008699_020 0.1101194785 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
11 Hb_001085_010 0.1108666602 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
12 Hb_026398_010 0.1113428973 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
13 Hb_002571_020 0.1121923302 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
14 Hb_000085_330 0.1125385138 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
15 Hb_009554_010 0.1132855033 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
16 Hb_000312_090 0.1141577707 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
17 Hb_000526_150 0.1155159002 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
18 Hb_000163_130 0.1158804259 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
19 Hb_001269_270 0.116610354 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_000184_050 0.1179303519 - - NOI, putative [Ricinus communis]

Gene co-expression network

sample Hb_000212_470 Hb_000212_470 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_003226_220 Hb_003226_220 Hb_000212_470--Hb_003226_220 Hb_000820_130 Hb_000820_130 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_008847_020--Hb_010883_150 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000526_150 Hb_000526_150 Hb_008847_020--Hb_000526_150 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_002835_320--Hb_000163_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3381 10.1093 8.98822 38.2483 30.0893 53.1184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.817 161.763 41.0116 41.2226 3.96208

CAGE analysis