Hb_000213_010

Information

Type -
Description -
Location Contig213: 26759-37897
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05650g
description POPTRDRAFT_576360; Villin 2 family protein
nr
ID XP_011033340.1
description PREDICTED: villin-3-like isoform X1 [Populus euphratica]
swissprot
ID O81644
description Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2
trembl
ID B9II82
description Villin 2 family protein OS=Populus trichocarpa GN=POPTR_0016s05650g PE=4 SV=1
Gene Ontology
ID GO:0051015
description villin-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22032: 23954-37922 , PASA_asmbl_22033: 23954-37922 , PASA_asmbl_22034: 24088-37922 , PASA_asmbl_22036: 30989-31115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_010 0.0 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
2 Hb_012022_090 0.0563213753 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
3 Hb_000029_300 0.061177825 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
4 Hb_001221_080 0.0675042376 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_021297_050 0.0694422727 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
6 Hb_003683_020 0.0709258486 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_000116_500 0.0718972753 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
8 Hb_005291_050 0.0719333429 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
9 Hb_000048_060 0.0733335302 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
10 Hb_002809_050 0.0743901712 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
11 Hb_003994_280 0.0748761476 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
12 Hb_006634_070 0.0753605524 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
13 Hb_000037_190 0.075462019 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
14 Hb_000009_560 0.0761404739 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_000696_050 0.0767026108 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
16 Hb_001047_220 0.0769938753 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
17 Hb_002909_140 0.0770000425 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
18 Hb_001679_050 0.0783793185 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
19 Hb_123903_010 0.0787940257 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
20 Hb_000060_090 0.0790803484 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]

Gene co-expression network

sample Hb_000213_010 Hb_000213_010 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_000060_090 Hb_000060_090 Hb_000029_300--Hb_000060_090 Hb_000923_010 Hb_000923_010 Hb_000029_300--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_000029_300--Hb_014361_070 Hb_000340_530 Hb_000340_530 Hb_000029_300--Hb_000340_530 Hb_007576_110 Hb_007576_110 Hb_000029_300--Hb_007576_110 Hb_000441_220 Hb_000441_220 Hb_001221_080--Hb_000441_220 Hb_001408_140 Hb_001408_140 Hb_001221_080--Hb_001408_140 Hb_001221_080--Hb_000029_300 Hb_002909_140 Hb_002909_140 Hb_001221_080--Hb_002909_140 Hb_013399_020 Hb_013399_020 Hb_001221_080--Hb_013399_020 Hb_021297_050--Hb_000116_500 Hb_001195_320 Hb_001195_320 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_021297_050--Hb_000029_300 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_000116_500--Hb_002811_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_000116_500--Hb_001195_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3875 24.9285 17.7288 36.2481 33.2268 29.9208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9259 18.5944 33.307 24.9367 24.9256

CAGE analysis