Hb_000213_020

Information

Type -
Description -
Location Contig213: 88059-89624
Sequence    

Annotation

kegg
ID rcu:RCOM_1215380
description hypothetical protein
nr
ID XP_002529503.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU34
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1215380 PE=4 SV=1
Gene Ontology
ID GO:0016740
description ribosomal protein l11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22039: 88835-89265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004005_060 0.0588588996 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
3 Hb_002203_010 0.0685133431 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
4 Hb_001085_160 0.0865663162 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
5 Hb_000933_040 0.0903006595 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_000878_080 0.098322745 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
7 Hb_024714_090 0.0990824094 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
8 Hb_002028_270 0.1006832101 - - Pectinesterase-1 precursor, putative [Ricinus communis]
9 Hb_000359_100 0.1043423242 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000830_010 0.1129719597 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001349_050 0.1132606449 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
12 Hb_003376_110 0.113277211 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001329_050 0.113924193 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005276_190 0.1172709499 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
15 Hb_002053_100 0.1188451756 - - actin binding protein, putative [Ricinus communis]
16 Hb_002818_060 0.1189415681 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000862_050 0.1200662615 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
18 Hb_002894_060 0.1215836457 - - respiratory burst oxidase D [Manihot esculenta]
19 Hb_007474_020 0.1220394424 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_011861_130 0.1271859433 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]

Gene co-expression network

sample Hb_000213_020 Hb_000213_020 Hb_004005_060 Hb_004005_060 Hb_000213_020--Hb_004005_060 Hb_002203_010 Hb_002203_010 Hb_000213_020--Hb_002203_010 Hb_001085_160 Hb_001085_160 Hb_000213_020--Hb_001085_160 Hb_000933_040 Hb_000933_040 Hb_000213_020--Hb_000933_040 Hb_000878_080 Hb_000878_080 Hb_000213_020--Hb_000878_080 Hb_024714_090 Hb_024714_090 Hb_000213_020--Hb_024714_090 Hb_004005_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_004005_060--Hb_000359_100 Hb_002028_270 Hb_002028_270 Hb_004005_060--Hb_002028_270 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_004005_060--Hb_000878_080 Hb_002203_010--Hb_000359_100 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_002203_010--Hb_000878_080 Hb_001085_160--Hb_024714_090 Hb_001571_080 Hb_001571_080 Hb_001085_160--Hb_001571_080 Hb_000830_010 Hb_000830_010 Hb_001085_160--Hb_000830_010 Hb_001085_160--Hb_004005_060 Hb_005568_140 Hb_005568_140 Hb_001085_160--Hb_005568_140 Hb_001329_050 Hb_001329_050 Hb_000933_040--Hb_001329_050 Hb_000056_290 Hb_000056_290 Hb_000933_040--Hb_000056_290 Hb_000933_040--Hb_004005_060 Hb_005694_170 Hb_005694_170 Hb_000933_040--Hb_005694_170 Hb_000933_040--Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_000027_160 Hb_000027_160 Hb_024714_090--Hb_000027_160 Hb_024714_090--Hb_001571_080 Hb_001633_160 Hb_001633_160 Hb_024714_090--Hb_001633_160 Hb_024714_090--Hb_002203_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.495113 4.04819 3.08407 0 0.0129843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0233847 0 0.177249 0.539088

CAGE analysis